JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
F13A1_chr6_6139084_6325662	0/0	a0014	732	1	0	0	1	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0015	732	1	0	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13B_chr1_197033741_197072260	0/0	a0001	661	264	33	48	142	11	30	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	1/1	a0002	661	62	49	5	0	1	5	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0003	661	7	1	0	6	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0004	661	3	3	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0005	661	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0006	661	1	0	0	1	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0007	661	1	0	0	0	0	1	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0008	661	1	0	1	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0009	661	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F13B_chr1_197033741_197072260	0/0	a0010	661	1	1	0	0	0	0	copy fasta	F13B	chr1	197033741	197072260
F2RL1_chr5_76814030_76840315	0/1	a0001	397	381	84	78	153	16	49	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	1/0	a0002	397	28	0	0	26	0	1	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	a0003	397	5	5	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	a0004	397	3	1	2	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	a0005	397	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	a0006	397	1	1	0	0	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL1_chr5_76814030_76840315	0/0	a0007	397	1	0	0	1	0	0	copy fasta	F2RL1	chr5	76814030	76840315
F2RL2_chr5_76610482_76628403	1/1	a0001	374	440	92	77	206	18	45	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	a0002	374	31	4	3	23	0	1	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	a0003	374	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	a0004	374	1	0	0	1	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL2_chr5_76610482_76628403	0/0	a0005	374	1	1	0	0	0	0	copy fasta	F2RL2	chr5	76610482	76628403
F2RL3_chr19_16883999_16897606	1/1	a0001	385	253	26	56	126	16	27	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0002	385	136	62	19	44	0	11	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0003	385	4	4	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0004	385	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0005	385	1	1	0	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0006	385	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0007	385	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0008	385	1	0	1	0	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0009	385	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2RL3_chr19_16883999_16897606	0/0	a0010	385	1	0	0	1	0	0	copy fasta	F2RL3	chr19	16883999	16897606
F2R_chr5_76711126_76740770	1/1	a0001	425	421	91	82	182	16	48	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	a0002	425	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2_chr11_46714213_46744506	1/0	a0001	622	266	93	47	83	11	31	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/1	a0002	622	82	1	14	60	1	5	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	a0003	622	1	0	0	1	0	0	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	a0004	622	1	0	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F3_chr1_94524173_94546759	1/1	a0001	295	446	87	78	218	16	45	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0002	295	5	3	0	1	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0003	295	3	3	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0004	295	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0005	295	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0006	295	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0007	295	1	0	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	a0008	295	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F5_chr1_169506951_169591481	0/0	a0001	2224	63	0	4	54	0	5	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0002	2224	39	7	15	8	4	5	copy fasta	F5	chr1	169506951	169591481