JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
F5_chr1_169506951_169591481	0/1	a0003	2224	37	4	8	15	0	9	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	1/0	a0004	2224	30	11	6	0	6	6	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0005	2224	30	4	10	12	1	3	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0006	2224	19	0	8	8	1	2	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0007	2224	14	14	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0008	2224	8	0	0	8	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0009	2224	8	5	3	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0010	2224	7	5	2	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0011	2224	7	7	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0012	2224	4	4	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0013	2224	3	0	0	3	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0014	2224	3	3	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0015	2224	2	0	0	2	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0016	2224	2	2	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0017	2224	2	2	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0018	2224	2	2	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0019	2224	2	2	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0020	2224	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0021	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0022	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0023	2224	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0024	2224	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0025	2224	1	0	0	0	1	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0026	2224	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0027	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0028	2224	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0029	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0030	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0031	2224	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0032	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0033	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0034	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0035	2224	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0036	2224	1	0	1	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0037	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0038	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0039	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0040	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0041	2224	1	0	0	0	1	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0042	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	a0043	2224	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F7_chr13_113100791_113125685	1/1	a0001	444	359	70	71	166	18	32	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	a0002	444	37	12	4	7	0	14	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	a0003	444	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	a0004	444	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	a0005	444	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	a0006	253	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F8A1_chrX_154881355_154893061	0/0	a0001	371	320	80	57	143	11	29	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	a0002	350	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	a0003	373	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061