JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
F8A1_chrX_154881355_154893061	0/0	a0004	371	1	0	0	0	0	1	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	a0005	371	1	0	1	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	a0006	347	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A2_chrX_155377095_155388801	0/0	a0001	371	254	69	52	95	11	27	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0002	303	2	0	0	2	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0003	32	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0004	305	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0005	371	1	1	0	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0006	371	1	1	0	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0007	371	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0008	342	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0009	303	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0010	348	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0011	375	1	0	1	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0012	374	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	a0013	33	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A3_chrX_155451914_155463620	0/0	a0001	371	267	63	52	111	10	31	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	a0002	352	1	0	0	1	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	a0003	371	1	1	0	0	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	a0004	371	1	0	0	1	0	0	copy fasta	F8A3	chrX	155451914	155463620
F8_chrX_154830792_155027723	1/1	a0001	2351	161	16	35	77	5	26	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0002	2351	47	28	7	6	4	2	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0003	2351	14	14	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0004	2351	2	2	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0005	2351	2	2	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0006	2351	1	0	1	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0007	2351	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0008	2351	1	0	1	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0009	1758	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0010	1377	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0011	2351	1	1	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	a0012	2351	1	1	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F9_chrX_139525739_139568459	1/0	a0001	461	229	64	38	98	8	20	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/1	a0002	461	28	11	5	0	3	8	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	a0003	461	3	2	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	a0004	461	1	0	0	1	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	a0005	461	1	0	0	1	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	a0006	461	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
FA2H_chr16_74707969_74779820	1/1	a0001	372	379	87	65	164	15	46	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	a0002	372	6	6	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	a0003	372	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	a0004	372	1	0	0	0	1	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	a0005	372	1	0	1	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FAAH2_chrX_57281706_57494193	1/1	a0001	532	274	68	52	117	11	24	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0002	532	2	0	0	2	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0003	25	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0004	532	1	1	0	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0005	532	1	1	0	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0006	497	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	a0007	93	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193