JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAAH2_chrX_57281706_57494193	0/0	a0008	532	1	0	1	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH_chr1_46389317_46418845	1/0	a0001	579	258	59	38	111	12	37	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/1	a0002	579	101	24	24	40	4	8	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	a0003	116	9	3	0	5	0	1	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	a0004	579	1	1	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	a0005	328	1	1	0	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAP100_chr17_81534891_81557353	0/1	a0001	881	207	36	34	94	9	33	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0002	881	124	31	24	53	6	10	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0003	881	53	6	3	41	0	3	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	1/0	a0004	881	15	3	6	1	2	2	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0005	881	11	1	10	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0006	881	5	4	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0007	881	4	4	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0008	881	4	1	3	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0009	881	2	0	0	0	0	2	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0010	881	2	2	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0011	881	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0012	881	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0013	881	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0014	881	1	0	0	0	1	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0015	881	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0016	881	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0017	881	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0018	881	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	a0019	881	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP20_chr1_2184548_2199772	0/1	a0001	180	314	41	60	157	13	42	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	a0002	180	75	55	6	7	3	4	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	a0003	180	2	0	0	2	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	1/0	a0004	180	1	0	0	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP24_chr19_32967242_32983229	1/1	a0001	215	342	75	68	148	15	34	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0002	215	74	1	9	54	2	8	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0003	215	23	4	1	9	1	8	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0004	215	10	10	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0005	215	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0006	215	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	a0007	215	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FABP12_chr8_81519981_81538867	0/0	a0001	140	410	95	71	188	16	40	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	a0002	140	3	1	0	2	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	a0003	140	1	0	1	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP1_chr2_88117982_88133062	1/0	a0001	127	366	85	55	168	11	46	copy fasta	FABP1	chr2	88117982	88133062
FABP1_chr2_88117982_88133062	0/1	a0002	127	102	15	27	50	5	4	copy fasta	FABP1	chr2	88117982	88133062
FABP2_chr4_119312250_119327138	0/1	a0001	132	313	79	63	133	12	25	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	1/0	a0002	132	107	15	15	55	6	15	copy fasta	FABP2	chr4	119312250	119327138
FABP3_chr1_31360253_31378076	1/1	a0001	133	385	88	66	175	12	42	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	a0002	133	2	0	0	0	2	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	a0003	133	1	0	0	1	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP4_chr8_81473419_81488233	1/1	a0001	132	404	94	78	176	14	40	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	a0002	132	2	0	2	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP5_chr8_81275536_81289775	0/0	a0001	135	264	90	50	100	6	18	copy fasta	FABP5	chr8	81275536	81289775
FABP6_chr5_160224506_160243716	1/0	a0001	128	276	46	50	147	10	22	copy fasta	FABP6	chr5	160224506	160243716