JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FABP6_chr5_160224506_160243716	0/1	a0002	128	186	47	25	84	7	22	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	a0003	128	7	5	2	0	0	0	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	a0004	128	6	0	3	0	1	2	copy fasta	FABP6	chr5	160224506	160243716
FABP6_chr5_160224506_160243716	0/0	a0005	128	1	0	0	1	0	0	copy fasta	FABP6	chr5	160224506	160243716
FABP7_chr6_122774716_122789074	1/1	a0001	132	471	96	82	225	18	48	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	a0002	132	7	0	0	7	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	a0003	132	1	1	0	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	a0004	132	1	1	0	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP9_chr8_81453253_81466579	1/1	a0001	132	408	77	80	198	10	41	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	a0002	132	8	6	2	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	a0003	132	7	7	0	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	a0004	132	6	6	0	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	a0005	132	1	0	0	0	0	1	copy fasta	FABP9	chr8	81453253	81466579
FADD_chr11_70198296_70212390	1/1	a0001	208	408	98	82	162	18	46	copy fasta	FADD	chr11	70198296	70212390
FADS1_chr11_61794627_61822003	1/1	a0001	501	270	62	56	113	13	24	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	a0002	501	1	0	0	0	1	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	a0003	505	1	0	0	1	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS2_chr11_61823300_61872354	1/1	a0001	444	280	84	54	106	12	22	copy fasta	FADS2	chr11	61823300	61872354
FADS3_chr11_61868526_61896545	1/1	a0001	445	416	99	70	187	14	44	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	a0002	445	1	1	0	0	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	a0003	445	1	0	0	1	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS6_chr17_74872302_74898633	1/1	a0001	368	235	32	38	117	12	34	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0002	374	109	23	23	50	5	8	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0003	350	31	10	7	10	0	4	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0004	380	24	9	3	9	1	2	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0005	350	17	15	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0006	362	9	2	1	5	0	1	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0007	368	5	0	2	3	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0008	386	4	4	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0009	356	2	0	1	0	0	1	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0010	350	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0011	350	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0012	368	1	0	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	a0013	290	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FAF1_chr1_50432028_50965267	1/0	a0001	650	189	84	34	48	8	14	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/1	a0002	650	1	0	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF2_chr5_176443385_176515074	1/1	a0001	445	365	84	64	166	10	39	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	a0002	445	3	0	0	3	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	a0003	445	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	a0004	445	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	a0005	445	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	a0006	445	1	0	0	0	0	1	copy fasta	FAF2	chr5	176443385	176515074
FAHD1_chr16_1822206_1833910	1/1	a0001	221	380	90	57	173	15	43	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	a0002	221	67	1	19	41	1	5	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	a0003	221	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD2A_chr2_95397708_95421616	1/1	a0001	314	350	68	66	164	12	38	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	a0002	314	3	0	0	3	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	a0003	314	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2B_chr2_97078583_97099882	1/1	a0001	314	388	94	62	177	16	37	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	a0002	314	14	5	6	0	2	1	copy fasta	FAHD2B	chr2	97078583	97099882