Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGAP4_chr10_45820594_45852500	0/0	a0013	686	3	2	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0014	686	3	2	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0015	686	2	0	0	0	0	2	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0016	686	2	0	0	2	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0017	686	2	0	1	0	1	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0018	686	2	2	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0019	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0020	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0021	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0022	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0023	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0024	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0025	686	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0026	686	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0027	686	1	0	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0028	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0029	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0030	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0031	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0032	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0033	686	1	0	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0034	686	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0035	686	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0036	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0037	686	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0038	686	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0039	686	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP5_chr10_73669295_73703109	1/1	a0001	686	179	35	21	100	1	20	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0002	686	82	28	17	17	6	14	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0003	686	62	13	6	33	1	9	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0004	652	14	1	0	13	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0005	686	12	0	6	6	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0006	686	6	5	1	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0007	686	3	3	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0008	686	2	0	0	2	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0009	686	1	0	1	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0010	289	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0011	291	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0012	686	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0013	686	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0014	686	1	0	0	0	0	1	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0015	686	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	a0016	686	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP6_chr10_49983406_50015499	1/1	a0001	686	193	41	30	97	5	18	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0002	686	111	20	22	60	4	5	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0003	27	39	5	11	14	2	7	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0004	121	20	9	2	7	1	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0005	620	6	6	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0006	686	6	1	5	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0007	686	4	3	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499