JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAHD2B_chr2_97078583_97099882	0/0	a0003	314	6	0	4	0	0	2	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	a0004	314	3	0	0	3	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	a0005	103	1	0	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	a0006	314	1	0	0	1	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	a0007	314	1	1	0	0	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAH_chr15_80147999_80191349	1/1	a0001	419	411	88	76	184	16	45	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0002	419	4	4	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0003	419	3	0	0	3	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0004	419	3	1	0	2	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0005	419	2	0	1	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0006	419	1	1	0	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0007	419	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0008	419	1	0	1	0	0	0	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0009	419	1	0	0	0	0	1	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	a0010	419	1	0	0	1	0	0	copy fasta	FAH	chr15	80147999	80191349
FAIM2_chr12_49861896_49908900	1/1	a0001	316	432	94	67	205	18	46	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	a0002	316	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	a0003	305	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	a0004	316	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM_chr3_138603771_138638376	1/1	a0001	201	261	18	50	132	14	45	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0002	201	53	45	8	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0003	201	34	21	6	4	0	3	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0004	201	14	8	6	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0005	201	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0006	201	1	0	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0007	201	1	0	0	1	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0008	201	1	0	0	1	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0009	201	1	0	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	a0010	201	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAM104A_chr17_73202365_73237394	1/1	a0001	207	391	97	75	165	12	40	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	a0002	208	4	2	1	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	a0003	207	4	0	0	4	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	a0004	207	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104B_chrX_55138102_55166185	1/1	a0001	115	295	78	43	129	11	32	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	a0002	115	1	0	1	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM107A_chr3_58559117_58582391	1/1	a0001	144	378	59	67	198	13	39	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	a0002	144	47	31	10	1	1	4	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	a0003	144	11	7	1	1	0	2	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	a0004	144	1	0	0	0	0	1	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	a0005	144	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107B_chr10_14513557_14779897	1/1	a0001	306	235	75	44	82	8	24	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	a0002	306	33	0	2	27	0	4	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	a0003	306	2	0	0	0	0	2	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	a0004	306	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	a0005	306	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM110A_chr20_828715_851277	1/1	a0001	295	425	89	77	205	10	42	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	a0002	295	7	7	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	a0003	295	2	0	0	0	0	2	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	a0004	8	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	a0005	295	1	0	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277