JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM110B_chr8_57989523_58153784	1/1	a0001	370	298	88	54	118	12	24	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	a0002	370	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	a0003	370	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110C_chr2_33814_51505	0/1	a0001	321	421	94	69	193	16	48	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0002	321	9	0	0	9	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0003	131	7	0	0	7	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0004	321	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0005	321	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	1/0	a0006	321	1	0	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0007	321	1	0	1	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	a0008	321	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110D_chr1_26154079_26168962	1/1	a0001	271	318	90	56	127	10	33	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0002	271	86	7	21	47	4	7	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0003	271	4	2	2	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0004	271	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0005	271	1	1	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0006	271	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	a0007	271	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM111A_chr11_59137856_59160039	1/1	a0001	611	415	79	77	198	17	42	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0002	611	6	6	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0003	611	5	5	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0004	611	3	0	2	0	0	1	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0005	611	3	3	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0006	611	2	2	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0007	611	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0008	611	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0009	611	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0010	611	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0011	611	1	0	1	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0012	269	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0013	611	1	0	0	0	0	1	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	a0014	611	1	0	0	0	1	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111B_chr11_59102237_59132412	1/1	a0001	734	385	92	68	172	13	38	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0002	734	22	0	1	20	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0003	734	3	2	1	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0004	734	1	0	0	0	1	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0005	734	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0006	734	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	a0007	734	1	0	0	0	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM114A1_chr4_38862806_38950739	1/1	a0001	563	268	49	48	130	7	32	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0002	563	54	27	9	13	2	3	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0003	563	9	3	2	2	0	2	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0004	563	9	0	6	1	1	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0005	563	8	5	0	0	0	3	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0006	563	5	0	4	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0007	563	4	0	0	2	0	2	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0008	563	3	3	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0009	563	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0010	563	2	0	1	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0011	563	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739