JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM114A1_chr4_38862806_38950739	0/0	a0012	563	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0013	563	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0014	563	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0015	563	1	0	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0016	563	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0017	563	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	a0018	563	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A2_chr5_153985148_154043910	0/0	a0001	505	220	51	34	102	5	28	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	1/1	a0002	505	104	28	24	33	5	12	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0003	505	8	0	4	0	2	2	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0004	505	7	7	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0005	505	2	2	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0006	505	1	1	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0007	505	1	1	0	0	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM114A2_chr5_153985148_154043910	0/0	a0008	505	1	0	0	1	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM117A_chr17_49705332_49769131	1/1	a0001	453	330	93	71	120	10	34	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	a0002	453	3	3	0	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	a0003	453	1	0	1	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	a0004	453	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	a0005	453	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117B_chr2_202629969_202774757	1/1	a0001	589	279	48	59	124	6	40	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	a0002	590	30	25	5	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	a0003	591	9	9	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM118A_chr22_45304934_45346955	0/1	a0001	161	227	79	35	93	4	15	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	1/0	a0002	357	172	11	37	85	14	24	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0003	161	7	3	1	1	0	2	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0004	223	3	0	0	3	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0005	357	2	1	0	0	0	1	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0006	161	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0007	357	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0008	203	1	0	1	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0009	163	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	a0010	223	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118B_chr11_126206782_126267968	1/1	a0001	351	341	83	64	135	15	42	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	a0002	351	3	3	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	a0003	351	1	0	0	1	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	a0004	351	1	0	0	0	1	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM120AOS_chr9_93438332_93458581	1/1	a0001	256	253	66	43	108	12	22	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0002	256	118	4	27	78	6	3	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0003	256	32	26	2	3	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0004	256	12	0	2	8	0	2	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0005	256	4	0	0	4	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0006	256	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0007	256	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	a0008	256	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120A_chr9_93446685_93571112	1/1	a0001	1118	317	88	58	135	16	18	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	a0002	1118	1	0	0	1	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120B_chr6_170301758_170412067	0/1	a0001	910	203	65	55	46	7	29	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0002	922	46	3	10	27	1	5	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0003	922	22	0	6	16	0	0	copy fasta	FAM120B	chr6	170301758	170412067