JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM120B_chr6_170301758_170412067	0/0	a0004	910	7	7	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0005	910	4	4	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0006	910	2	1	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0007	910	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0008	910	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0009	910	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0010	910	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	a0011	922	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120C_chrX_54063324_54188254	1/1	a0001	1096	179	47	28	83	3	16	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0002	1098	4	0	3	0	1	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0003	1096	2	2	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0004	1096	1	0	0	0	1	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0005	511	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0006	573	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0007	1096	1	1	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	a0008	196	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM124A_chr13_51217398_51289239	1/1	a0001	546	336	61	56	167	12	38	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0002	546	43	15	7	16	3	2	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0003	546	12	11	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0004	546	7	7	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0005	546	2	0	0	2	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0006	546	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0007	546	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0008	546	1	0	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0009	546	1	0	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0010	546	1	0	0	0	1	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	a0011	546	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124B_chr2_224373698_224407107	1/1	a0001	455	351	86	68	152	9	34	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	a0002	455	80	5	11	51	3	10	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	a0003	455	9	5	1	1	2	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	a0004	455	2	2	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM131A_chr3_184332600_184351275	1/0	a0001	366	443	94	78	208	16	46	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/1	a0002	366	5	0	2	0	2	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131B_chr7_143348400_143367713	1/1	a0001	360	348	85	60	147	13	41	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	a0002	360	118	9	26	69	5	9	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	a0003	360	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	a0004	360	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131C_chr1_16052769_16078651	0/0	a0001	280	162	7	24	115	1	15	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/1	a0002	280	68	24	22	1	9	11	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0003	280	58	33	16	0	4	5	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	1/0	a0004	280	41	1	5	29	1	4	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0005	280	14	11	2	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0006	280	11	10	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0007	280	5	5	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0008	280	3	2	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0009	280	3	3	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0010	280	3	1	0	0	1	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0011	280	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0012	280	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0013	280	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651