JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM131C_chr1_16052769_16078651	0/0	a0014	280	1	0	0	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0015	280	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0016	280	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0017	280	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	a0018	280	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM133A_chrX_93669206_93717265	1/1	a0001	248	291	70	49	129	10	31	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	a0002	248	3	0	2	0	1	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	a0003	248	2	2	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	a0004	146	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	a0005	248	1	0	0	0	0	1	copy fasta	FAM133A	chrX	93669206	93717265
FAM133B_chr7_92555758_92595390	1/1	a0001	247	327	82	46	154	10	33	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	a0002	247	1	0	0	0	0	1	copy fasta	FAM133B	chr7	92555758	92595390
FAM135A_chr6_70408508_70566174	1/0	a0001	1515	191	70	49	48	7	16	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/1	a0002	1515	57	3	8	32	5	8	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0003	1515	8	7	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0004	1515	2	0	0	2	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0005	1515	2	0	2	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0006	1515	2	2	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0007	1515	1	0	0	1	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0008	1515	1	0	0	1	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0009	1515	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0010	1515	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0011	1515	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	a0012	1515	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135B_chr8_138125023_138502261	0/0	a0001	1406	82	35	13	21	2	11	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/1	a0002	1406	60	7	13	29	4	6	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	1/0	a0003	1406	57	28	11	9	2	6	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0004	1406	3	3	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0005	1406	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0006	1406	1	0	1	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0007	1406	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0008	1406	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0009	1406	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0010	1406	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0011	1406	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0012	1406	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	a0013	1406	1	0	0	0	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM136A_chr2_70290976_70307067	1/1	a0001	245	241	39	40	121	9	30	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0002	245	183	43	39	84	3	14	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0003	245	5	4	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0004	245	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0005	245	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0006	245	3	3	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0007	245	1	0	0	1	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	a0008	245	1	1	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM13A_chr4_88720960_89062185	1/1	a0001	1023	121	30	25	51	5	8	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0002	1023	57	23	12	15	1	6	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0003	1023	11	9	1	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0004	1023	5	5	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0005	1023	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185