JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM13A_chr4_88720960_89062185	0/0	a0006	1023	2	0	2	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0007	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0008	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0009	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0010	1023	1	0	0	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0011	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0012	1023	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0013	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0014	1023	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0015	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	a0016	1023	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13B_chr5_137932960_138038079	1/1	a0001	937	314	92	74	106	12	28	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	a0002	937	6	2	1	0	2	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	a0003	937	1	0	1	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	a0004	937	1	0	0	0	0	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13C_chr10_59241133_59367549	1/1	a0001	585	189	74	29	60	2	22	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0002	585	6	4	2	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0003	585	4	2	2	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0004	585	2	2	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0005	585	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0006	585	1	0	1	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	a0007	585	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM149A_chr4_186099704_186180337	0/0	a0001	772	139	8	24	86	7	14	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0002	772	53	28	12	6	0	7	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	1/0	a0003	772	51	0	9	30	3	8	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0004	772	49	7	6	31	0	5	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/1	a0005	772	21	8	5	5	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0006	772	18	12	4	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0007	772	8	2	4	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0008	772	7	7	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0009	772	6	1	0	5	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0010	772	4	3	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0011	772	3	3	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0012	772	3	3	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0013	772	3	2	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0014	772	3	2	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0015	772	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0016	772	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0017	772	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0018	772	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0019	772	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0020	772	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0021	772	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0022	772	1	0	0	0	1	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0023	772	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0024	772	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0025	772	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0026	772	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0027	772	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0028	772	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337