JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM149A_chr4_186099704_186180337	0/0	a0029	772	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0030	772	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0031	772	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0032	772	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0033	772	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	a0034	772	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149B1_chr10_73163119_73249504	0/0	a0001	582	124	51	18	41	0	14	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0002	582	70	4	4	54	0	8	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0003	577	35	17	2	16	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0004	582	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0005	582	1	0	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0006	582	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0007	582	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0008	577	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0009	577	1	0	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	a0010	577	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM151A_chr1_54604181_54628525	1/1	a0001	585	250	55	38	124	9	22	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0002	585	106	18	30	36	5	17	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0003	585	46	6	8	30	0	2	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0004	585	10	9	1	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0005	585	10	0	0	10	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0006	585	5	1	0	2	1	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0007	337	5	0	3	0	1	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0008	585	5	5	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0009	585	3	0	0	3	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0010	272	3	3	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0011	585	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0012	585	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0013	585	1	0	0	1	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0014	585	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	a0015	585	1	0	0	0	0	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151B_chr5_80483100_80547563	0/0	a0001	276	251	73	50	87	11	30	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	1/1	a0002	276	103	14	19	55	1	12	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	a0003	276	1	0	1	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	a0004	276	1	1	0	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM153A_chr5_177718364_177787899	1/1	a0001	310	30	8	6	12	0	2	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	a0002	310	3	3	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	a0003	310	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	a0004	310	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	a0005	310	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM156A_chrX_52942254_52963518	0/0	a0001	213	156	44	40	48	5	19	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	a0002	213	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	a0003	117	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	a0004	117	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	a0005	177	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	a0006	39	1	0	0	0	1	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156B_chrX_52892330_52913560	0/0	a0001	213	181	46	27	88	3	17	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	a0002	115	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM161A_chr2_61819848_61859060	1/1	a0001	716	275	64	48	125	12	24	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0002	716	68	8	9	38	4	9	copy fasta	FAM161A	chr2	61819848	61859060