JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM161A_chr2_61819848_61859060	0/0	a0003	716	37	4	12	15	2	4	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0004	716	6	6	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0005	716	3	3	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0006	716	2	0	0	0	0	2	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0007	716	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0008	716	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0009	716	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0010	716	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0011	716	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0012	716	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0013	716	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0014	716	1	0	1	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	a0015	716	1	0	0	0	0	1	copy fasta	FAM161A	chr2	61819848	61859060
FAM161B_chr14_73927276_73955094	1/1	a0001	647	237	60	49	94	9	23	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0002	647	156	21	22	87	5	21	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0003	647	16	0	4	12	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0004	647	9	8	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0005	647	7	0	0	7	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0006	647	5	1	2	0	2	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0007	647	3	3	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0008	647	2	1	1	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0009	647	2	2	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0010	647	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0011	239	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0012	647	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0013	647	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	a0014	647	1	0	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM162A_chr3_122379182_122417334	1/0	a0001	154	403	94	70	179	16	43	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	a0002	154	15	0	0	13	0	2	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/1	a0003	154	3	0	1	0	0	1	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	a0004	154	1	0	1	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162B_chr6_116747197_116770719	1/1	a0001	162	416	82	68	212	15	37	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	a0002	162	48	12	12	19	3	2	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	a0003	162	7	1	0	1	0	5	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	a0004	162	3	3	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM163A_chr1_179738291_179821198	1/1	a0001	167	226	90	36	60	12	26	copy fasta	FAM163A	chr1	179738291	179821198
FAM163B_chr9_133572081_133614389	1/1	a0001	166	378	93	76	145	18	44	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	a0002	166	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	a0003	166	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	a0004	166	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	a0005	166	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM166A_chr9_137238599_137252751	0/0	a0001	317	374	96	68	150	16	44	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0002	317	17	0	0	17	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0003	317	14	0	8	6	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0004	317	3	3	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0005	317	2	0	1	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0006	317	2	0	0	2	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0007	40	1	0	0	0	0	1	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0008	317	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0009	317	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751