JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM166A_chr9_137238599_137252751	0/0	a0010	317	1	1	0	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0011	317	1	0	0	1	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166A_chr9_137238599_137252751	0/0	a0012	317	1	0	1	0	0	0	copy fasta	FAM166A	chr9	137238599	137252751
FAM166B_chr9_35556831_35568878	1/1	a0001	275	344	86	72	132	14	38	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	a0002	240	80	1	7	65	1	6	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	a0003	240	7	6	0	0	0	1	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	a0004	275	2	1	1	0	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	a0005	275	2	0	0	0	1	1	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	a0006	275	1	0	0	1	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166C_chr2_26557587_26584524	1/1	a0001	201	272	82	59	107	7	15	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0002	201	134	10	14	79	5	26	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0003	201	1	1	0	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0004	157	1	0	0	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0005	162	1	0	0	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0006	201	1	1	0	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0007	201	1	0	1	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	a0008	201	1	0	0	0	0	1	copy fasta	FAM166C	chr2	26557587	26584524
FAM167A_chr8_11416476_11471753	0/1	a0001	214	338	88	59	135	10	45	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0002	214	25	5	14	0	4	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0003	214	4	0	1	2	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0004	214	2	0	0	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0005	214	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	1/0	a0006	214	1	0	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0007	214	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	a0008	214	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167B_chr1_32242222_32253856	1/1	a0001	163	373	92	62	155	16	46	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	a0002	163	3	1	0	0	2	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	a0003	163	1	1	0	0	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	a0004	163	1	0	0	1	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM168A_chr11_73395487_73603112	1/1	a0001	235	179	86	25	44	10	12	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	a0002	235	1	0	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168B_chr2_131042876_131098460	1/1	a0001	195	260	94	58	68	10	28	copy fasta	FAM168B	chr2	131042876	131098460
FAM169A_chr5_74772574_74871387	1/1	a0001	670	307	88	64	101	14	38	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	a0002	670	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM170A_chr5_119624558_119640822	1/1	a0001	330	243	66	46	97	8	24	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0002	330	186	28	29	97	10	22	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0003	330	2	0	0	2	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0004	330	1	1	0	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0005	330	1	0	0	0	0	1	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0006	330	1	1	0	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0007	330	1	0	1	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	a0008	330	1	0	0	0	0	1	copy fasta	FAM170A	chr5	119624558	119640822
FAM170B_chr10_49126154_49139021	1/0	a0001	283	214	58	35	97	7	16	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/1	a0002	283	86	8	21	43	3	10	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0003	283	34	20	1	10	0	3	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0004	283	18	1	8	0	2	7	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0005	283	15	1	0	14	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0006	283	11	2	1	2	0	6	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0007	283	3	0	3	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0008	283	3	0	0	3	0	0	copy fasta	FAM170B	chr10	49126154	49139021