JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM170B_chr10_49126154_49139021	0/0	a0009	283	3	2	1	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0010	283	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0011	283	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	a0012	283	1	0	0	1	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM171A1_chr10_15206643_15376289	1/0	a0001	890	275	85	43	107	13	26	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	a0002	890	25	0	9	11	1	4	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	a0003	890	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	a0004	890	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	a0005	890	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A2_chr17_44348215_44368853	1/1	a0001	826	394	88	58	185	17	44	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	a0002	826	17	1	5	8	1	2	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	a0003	826	2	2	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	a0004	826	1	0	0	1	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	a0005	826	1	0	1	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	a0006	826	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171B_chr2_186689060_186770959	0/1	a0001	827	239	66	48	81	10	33	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0002	828	68	14	19	22	4	9	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0003	827	7	4	2	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	1/0	a0004	826	6	5	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0005	829	4	3	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0006	827	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0007	826	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0008	827	1	0	0	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0009	827	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0010	827	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0011	827	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	a0012	827	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM172A_chr5_93612725_94116663	1/1	a0001	416	124	54	16	38	4	10	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	a0002	416	2	2	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM174A_chr5_100530374_100591741	1/1	a0001	190	285	78	61	111	14	19	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	a0002	190	8	7	1	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	a0003	190	3	3	0	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	a0004	190	1	0	0	0	0	1	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	a0005	190	1	0	0	1	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174B_chr15_92612448_92660775	0/1	a0001	157	371	78	70	169	11	42	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	1/0	a0002	159	13	11	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0003	157	3	2	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0004	157	2	0	0	2	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0005	157	1	0	0	0	1	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0006	157	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0007	157	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0008	157	1	0	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	a0009	157	1	1	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174C_chr19_1270530_1284228	0/1	a0001	195	245	73	59	63	11	38	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	1/0	a0002	195	5	0	3	0	1	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	a0003	195	3	3	0	0	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM174C_chr19_1270530_1284228	0/0	a0004	195	1	0	0	1	0	0	copy fasta	FAM174C	chr19	1270530	1284228
FAM177A1_chr14_35041272_35088378	1/1	a0001	236	368	96	76	143	13	38	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	a0002	236	1	0	0	0	1	0	copy fasta	FAM177A1	chr14	35041272	35088378
FAM177A1_chr14_35041272_35088378	0/0	a0003	236	1	0	0	1	0	0	copy fasta	FAM177A1	chr14	35041272	35088378