Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGAP6_chr10_49983406_50015499	0/0	a0008	686	3	3	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0009	447	3	0	0	3	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0010	686	2	0	0	2	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0011	686	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0012	620	2	2	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0013	686	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0014	686	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0015	686	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0016	686	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0017	686	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0018	686	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0019	686	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0020	141	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0021	686	1	0	1	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0022	686	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0023	686	1	1	0	0	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0024	686	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0025	686	1	0	0	1	0	0	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0026	686	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP6_chr10_49983406_50015499	0/0	a0027	686	1	0	0	0	0	1	copy fasta	AGAP6	chr10	49983406	50015499
AGAP9_chr10_47496854_47528638	0/0	a0000	0	3	3	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	1/1	a0001	658	155	28	35	55	13	22	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0002	27	12	6	2	0	0	4	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0003	658	10	9	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0004	658	8	7	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0005	11	3	2	1	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0006	658	2	1	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0007	658	2	0	2	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0008	658	2	0	0	0	1	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0009	658	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0010	658	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0011	658	1	0	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0012	658	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0013	658	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0014	658	1	1	0	0	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0015	658	1	0	0	1	0	0	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0016	658	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGAP9_chr10_47496854_47528638	0/0	a0017	658	1	0	0	0	0	1	copy fasta	AGAP9	chr10	47496854	47528638
AGA_chr4_177425774_177447437	0/1	a0001	346	407	67	73	204	16	46	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	1/0	a0002	346	25	22	2	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	a0003	346	4	4	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	a0004	346	3	0	3	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	a0005	346	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	a0006	346	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGA_chr4_177425774_177447437	0/0	a0007	346	1	1	0	0	0	0	copy fasta	AGA	chr4	177425774	177447437
AGBL1_chr15_86074871_86921156	0/0	a0001	1121	79	33	15	18	2	11	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0002	1121	12	4	2	0	0	6	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0003	1121	10	6	3	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0004	1121	7	7	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0005	1121	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156