JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM177B_chr1_222732202_222756004	0/1	a0001	158	240	24	42	127	15	31	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	1/0	a0002	158	89	22	20	36	1	9	copy fasta	FAM177B	chr1	222732202	222756004
FAM177B_chr1_222732202_222756004	0/0	a0003	158	71	50	6	5	2	8	copy fasta	FAM177B	chr1	222732202	222756004
FAM178B_chr2_96870885_96991580	0/0	a0001	679	115	52	14	40	1	8	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	1/1	a0002	679	85	11	20	35	0	17	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0003	679	13	10	1	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0004	679	12	3	7	0	1	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0005	679	7	0	7	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0006	679	6	6	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0007	679	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0008	679	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0009	679	2	0	0	2	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0010	679	1	0	1	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0011	679	1	0	0	0	0	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0012	679	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0013	679	1	0	0	0	0	1	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0014	679	1	1	0	0	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM178B_chr2_96870885_96991580	0/0	a0015	679	1	0	0	1	0	0	copy fasta	FAM178B	chr2	96870885	96991580
FAM180A_chr7_135724592_135753813	1/1	a0001	173	419	80	77	201	18	41	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	a0002	173	8	8	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	a0003	173	5	0	0	5	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	a0004	173	2	0	1	0	0	1	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	a0005	173	1	1	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180A_chr7_135724592_135753813	0/0	a0006	173	1	1	0	0	0	0	copy fasta	FAM180A	chr7	135724592	135753813
FAM180B_chr11_47581678_47594194	0/1	a0001	183	408	85	82	182	16	42	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	1/0	a0002	183	5	4	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM180B_chr11_47581678_47594194	0/0	a0003	183	1	1	0	0	0	0	copy fasta	FAM180B	chr11	47581678	47594194
FAM181A_chr14_93922344_93934608	0/1	a0001	292	434	98	71	204	14	46	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	a0002	292	2	0	0	0	0	2	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	a0003	292	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	a0004	292	1	0	1	0	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181A_chr14_93922344_93934608	0/0	a0005	292	1	0	0	1	0	0	copy fasta	FAM181A	chr14	93922344	93934608
FAM181B_chr11_82724940_82738864	1/1	a0001	426	136	9	29	70	8	18	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0002	426	133	8	14	99	3	9	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0003	426	79	14	26	19	2	18	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0004	426	59	50	3	0	3	3	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0005	426	8	0	0	8	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0006	426	7	7	0	0	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0007	426	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0008	426	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0009	426	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM181B_chr11_82724940_82738864	0/0	a0010	426	1	0	0	1	0	0	copy fasta	FAM181B	chr11	82724940	82738864
FAM184A_chr6_118954763_119083664	1/1	a0001	1140	259	80	56	94	7	20	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0002	1140	17	3	5	4	1	4	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0003	1140	5	0	5	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0004	1140	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0005	1140	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0006	1140	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0007	1140	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664
FAM184A_chr6_118954763_119083664	0/0	a0008	1140	1	1	0	0	0	0	copy fasta	FAM184A	chr6	118954763	119083664