JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM184B_chr4_17624306_17786621	0/0	a0001	1060	89	44	11	20	4	10	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/1	a0002	1060	86	12	21	32	5	15	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0003	1060	6	6	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0004	1060	5	5	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0005	1060	5	5	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0006	1060	5	0	0	0	0	5	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0007	1060	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0008	1060	3	2	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0009	1060	3	3	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0010	1060	3	0	2	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0011	1060	2	0	2	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	1/0	a0012	1060	2	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0013	1060	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0014	1060	2	0	0	2	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0015	1060	2	2	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0016	1060	2	1	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0017	1060	2	0	2	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0018	1060	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0019	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0020	1060	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0021	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0022	1060	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0023	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0024	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0025	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0026	1060	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0027	1060	1	1	0	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0028	1060	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0029	1060	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0030	1060	1	0	0	0	1	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0031	1060	1	0	0	0	0	1	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0032	1060	1	0	0	1	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM184B_chr4_17624306_17786621	0/0	a0033	1060	1	0	1	0	0	0	copy fasta	FAM184B	chr4	17624306	17786621
FAM185A_chr7_102743999_102814225	0/0	a0001	392	270	66	38	123	10	33	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	a0002	392	46	7	4	30	2	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/1	a0003	392	36	9	20	0	3	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	a0004	392	18	0	5	9	1	3	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	1/0	a0005	392	5	4	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	a0006	392	3	2	1	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	a0007	392	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM185A_chr7_102743999_102814225	0/0	a0008	392	1	1	0	0	0	0	copy fasta	FAM185A	chr7	102743999	102814225
FAM186A_chr12_50322309_50401609	0/0	a0001	2387	93	6	27	45	5	10	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0002	2387	91	20	12	55	0	4	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/1	a0003	2351	75	18	12	33	1	10	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0004	2351	14	1	8	0	3	2	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	1/0	a0005	2351	13	12	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0006	2387	5	4	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0007	2387	5	5	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0008	2351	3	3	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0009	2387	3	3	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609