JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM186A_chr12_50322309_50401609	0/0	a0010	2387	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0011	2351	2	0	0	0	0	2	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0012	2339	2	0	0	2	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0013	2387	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0014	2387	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0015	2387	2	2	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0016	2387	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0017	2387	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0018	2351	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0019	2351	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0020	1213	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0021	2351	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0022	2351	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0023	2351	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0024	2387	1	0	0	0	0	1	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0025	2387	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0026	1414	1	0	0	1	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0027	2387	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0028	2387	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0029	2363	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0030	2209	1	0	0	0	1	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0031	2387	1	0	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0032	2351	1	0	1	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186A_chr12_50322309_50401609	0/0	a0033	2351	1	1	0	0	0	0	copy fasta	FAM186A	chr12	50322309	50401609
FAM186B_chr12_49582505_49610639	1/1	a0001	893	171	26	51	51	10	31	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0002	893	36	8	10	14	2	2	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0003	893	13	12	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0004	893	12	11	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0005	893	11	11	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0006	893	9	9	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0007	893	3	0	0	3	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0008	893	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0009	893	2	2	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0010	461	1	0	1	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0011	893	1	0	0	1	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0012	893	1	0	0	1	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0013	893	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0014	893	1	0	0	0	0	1	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0015	893	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM186B_chr12_49582505_49610639	0/0	a0016	893	1	1	0	0	0	0	copy fasta	FAM186B	chr12	49582505	49610639
FAM187A_chr17_44898433_44910390	1/0	a0001	413	318	78	50	143	12	34	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0002	414	69	10	9	41	1	8	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/1	a0003	414	25	9	12	0	1	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0004	413	7	0	2	0	3	2	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0005	414	3	1	1	0	1	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0006	413	2	0	2	0	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0007	413	2	0	0	2	0	0	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0008	413	1	0	0	0	0	1	copy fasta	FAM187A	chr17	44898433	44910390
FAM187A_chr17_44898433_44910390	0/0	a0009	413	1	0	0	0	0	1	copy fasta	FAM187A	chr17	44898433	44910390
FAM187B_chr19_35219800_35233739	1/0	a0001	369	223	38	20	149	3	12	copy fasta	FAM187B	chr19	35219800	35233739