JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM187B_chr19_35219800_35233739	0/0	a0002	187	125	34	30	33	7	21	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/1	a0003	369	51	10	20	7	5	8	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0004	369	33	1	5	25	0	2	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0005	369	12	12	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0006	369	3	0	2	0	0	1	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0007	187	1	0	0	0	1	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0008	369	1	0	1	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM187B_chr19_35219800_35233739	0/0	a0009	369	1	1	0	0	0	0	copy fasta	FAM187B	chr19	35219800	35233739
FAM193A_chr4_2531647_2737573	1/1	a0001	1515	258	46	53	113	12	32	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0002	26	12	2	3	4	1	2	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0003	1515	12	12	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0004	1515	11	11	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0005	1515	9	2	2	2	0	3	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0006	1515	8	5	0	2	0	1	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0007	1515	8	8	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0008	1515	4	0	0	4	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0009	1515	2	2	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0010	1515	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0011	1515	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0012	1515	1	0	0	1	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0013	1515	1	0	1	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0014	1515	1	1	0	0	0	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193A_chr4_2531647_2737573	0/0	a0015	1515	1	0	0	0	1	0	copy fasta	FAM193A	chr4	2531647	2737573
FAM193B_chr5_177514789_177559563	0/1	a0001	822	350	71	66	164	12	36	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	1/0	a0002	822	5	4	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0003	822	4	4	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0004	822	3	3	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0005	822	2	0	2	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0006	822	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0007	822	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0008	822	1	0	0	1	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0009	822	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0010	822	1	0	1	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM193B_chr5_177514789_177559563	0/0	a0011	822	1	1	0	0	0	0	copy fasta	FAM193B	chr5	177514789	177559563
FAM199X_chrX_104161453_104200902	1/1	a0001	388	285	72	45	123	13	30	copy fasta	FAM199X	chrX	104161453	104200902
FAM200A_chr7_99541300_99557114	1/1	a0001	573	371	89	58	164	14	44	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	a0002	573	5	0	0	5	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	a0003	573	1	0	0	1	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200A_chr7_99541300_99557114	0/0	a0004	573	1	1	0	0	0	0	copy fasta	FAM200A	chr7	99541300	99557114
FAM200B_chr4_15676827_15695447	0/0	a0001	657	251	66	39	111	6	29	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0002	657	144	19	26	82	4	13	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/1	a0003	657	22	0	7	9	5	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	1/0	a0004	657	5	0	1	0	3	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0005	656	3	3	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0006	657	2	2	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0007	657	2	0	0	2	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0008	657	1	0	0	1	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0009	657	1	1	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0010	657	1	0	0	1	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200B_chr4_15676827_15695447	0/0	a0011	657	1	1	0	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447