JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM200B_chr4_15676827_15695447	0/0	a0012	657	1	0	1	0	0	0	copy fasta	FAM200B	chr4	15676827	15695447
FAM200C_chr5_160388148_160405054	1/1	a0001	594	413	86	72	204	14	35	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0002	594	13	1	7	0	2	3	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0003	594	4	3	1	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0004	594	3	0	0	3	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0005	594	1	0	0	0	0	1	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0006	594	1	1	0	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0007	594	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0008	594	1	0	0	0	0	1	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0009	594	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0010	594	1	0	0	1	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM200C_chr5_160388148_160405054	0/0	a0011	594	1	1	0	0	0	0	copy fasta	FAM200C	chr5	160388148	160405054
FAM204A_chr10_118292925_118347324	1/1	a0001	233	393	90	76	175	16	34	copy fasta	FAM204A	chr10	118292925	118347324
FAM204A_chr10_118292925_118347324	0/0	a0002	233	1	0	0	1	0	0	copy fasta	FAM204A	chr10	118292925	118347324
FAM209A_chr20_56519744_56531152	1/1	a0001	171	408	88	73	187	18	40	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0002	171	5	0	2	2	0	1	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0003	171	4	0	4	0	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0004	171	2	0	0	0	0	2	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0005	171	1	0	0	1	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0006	171	1	0	0	0	0	1	copy fasta	FAM209A	chr20	56519744	56531152
FAM209A_chr20_56519744_56531152	0/0	a0007	171	1	0	1	0	0	0	copy fasta	FAM209A	chr20	56519744	56531152
FAM209B_chr20_56528246_56541520	0/1	a0001	171	160	75	43	18	6	17	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	1/0	a0002	171	141	4	26	84	6	20	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0003	171	91	2	4	85	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0004	171	11	1	4	1	0	5	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0005	171	8	7	1	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0006	171	3	3	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0007	171	1	1	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM209B_chr20_56528246_56541520	0/0	a0008	171	1	1	0	0	0	0	copy fasta	FAM209B	chr20	56528246	56541520
FAM20A_chr17_68530116_68606367	0/0	a0001	541	192	55	23	80	8	26	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0002	541	132	18	28	72	5	9	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	1/1	a0003	541	44	5	17	9	3	8	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0004	541	3	3	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0005	541	2	0	0	2	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0006	541	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0007	541	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0008	541	1	0	0	0	0	1	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0009	541	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0010	541	1	1	0	0	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0011	541	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20A_chr17_68530116_68606367	0/0	a0012	541	1	0	0	1	0	0	copy fasta	FAM20A	chr17	68530116	68606367
FAM20B_chr1_179020894_179081567	1/1	a0001	409	406	89	78	190	14	33	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	a0002	409	1	1	0	0	0	0	copy fasta	FAM20B	chr1	179020894	179081567
FAM20B_chr1_179020894_179081567	0/0	a0003	409	1	0	0	0	0	1	copy fasta	FAM20B	chr1	179020894	179081567
FAM210A_chr18_13658347_13731558	1/1	a0001	272	324	85	66	111	16	44	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	a0002	272	1	1	0	0	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210A_chr18_13658347_13731558	0/0	a0003	206	1	0	0	1	0	0	copy fasta	FAM210A	chr18	13658347	13731558
FAM210B_chr20_56353974_56373663	1/0	a0001	192	310	50	43	172	9	35	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/1	a0002	192	81	49	17	0	3	11	copy fasta	FAM210B	chr20	56353974	56373663
FAM210B_chr20_56353974_56373663	0/0	a0003	192	1	1	0	0	0	0	copy fasta	FAM210B	chr20	56353974	56373663