JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM216A_chr12_110463845_110495385	1/1	a0001	273	306	89	60	102	16	37	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	a0002	273	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	a0003	273	1	0	0	0	0	1	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	a0004	273	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216A_chr12_110463845_110495385	0/0	a0005	273	1	1	0	0	0	0	copy fasta	FAM216A	chr12	110463845	110495385
FAM216B_chr13_42776584_42796549	1/1	a0001	139	447	83	78	218	18	48	copy fasta	FAM216B	chr13	42776584	42796549
FAM216B_chr13_42776584_42796549	0/0	a0002	139	5	3	2	0	0	0	copy fasta	FAM216B	chr13	42776584	42796549
FAM217A_chr6_4063367_4084137	0/1	a0001	508	227	13	49	116	13	35	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0002	508	114	17	19	73	3	2	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	1/0	a0003	508	37	28	5	0	0	3	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0004	508	14	12	2	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0005	508	12	4	6	0	2	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0006	508	9	8	1	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0007	508	6	6	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0008	508	3	3	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0009	508	3	3	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0010	508	3	0	0	0	0	3	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0011	508	2	2	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0012	508	1	0	0	0	0	1	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0013	508	1	0	0	1	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0014	508	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217A_chr6_4063367_4084137	0/0	a0015	508	1	1	0	0	0	0	copy fasta	FAM217A	chr6	4063367	4084137
FAM217B_chr20_59935389_59953680	1/1	a0001	383	369	86	67	157	16	41	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0002	383	2	1	1	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0003	383	1	1	0	0	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0004	383	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0005	383	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0006	383	1	0	0	0	0	1	copy fasta	FAM217B	chr20	59935389	59953680
FAM217B_chr20_59935389_59953680	0/0	a0007	383	1	0	0	1	0	0	copy fasta	FAM217B	chr20	59935389	59953680
FAM219A_chr9_34393184_34463570	1/1	a0001	185	396	84	74	186	12	38	copy fasta	FAM219A	chr9	34393184	34463570
FAM219B_chr15_74894992_74911851	1/1	a0001	198	429	84	70	211	14	48	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	a0002	198	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	a0003	198	1	0	0	1	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM219B_chr15_74894992_74911851	0/0	a0004	198	1	1	0	0	0	0	copy fasta	FAM219B	chr15	74894992	74911851
FAM220A_chr7_6324411_6353967	0/1	a0001	259	241	53	38	128	3	18	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	1/0	a0002	259	84	10	25	22	11	15	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0003	259	46	31	2	7	3	3	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0004	259	42	1	9	25	1	6	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0005	259	2	0	0	2	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0006	3	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0007	259	1	0	0	1	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0008	259	1	1	0	0	0	0	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0009	259	1	0	0	0	0	1	copy fasta	FAM220A	chr7	6324411	6353967
FAM220A_chr7_6324411_6353967	0/0	a0010	259	1	0	0	0	0	1	copy fasta	FAM220A	chr7	6324411	6353967
FAM221A_chr7_23675199_23707650	1/1	a0001	298	353	87	73	139	17	35	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	a0002	298	47	0	2	37	1	7	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	a0003	298	6	4	2	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	a0004	298	2	2	0	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	a0005	298	1	1	0	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650
FAM221A_chr7_23675199_23707650	0/0	a0006	298	1	0	1	0	0	0	copy fasta	FAM221A	chr7	23675199	23707650