JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM221B_chr9_35811391_35833732	1/1	a0001	402	292	69	49	130	10	32	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0002	402	121	20	21	70	2	8	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0003	402	3	3	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0004	402	2	0	0	0	0	2	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0005	402	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0006	402	1	1	0	0	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0007	402	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM221B_chr9_35811391_35833732	0/0	a0008	402	1	0	0	1	0	0	copy fasta	FAM221B	chr9	35811391	35833732
FAM222A_chr12_109708825_109775495	1/1	a0001	452	351	85	56	152	16	40	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0002	452	5	5	0	0	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0003	452	5	0	0	5	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0004	452	2	0	0	2	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0005	452	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0006	452	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222A_chr12_109708825_109775495	0/0	a0007	452	1	0	0	1	0	0	copy fasta	FAM222A	chr12	109708825	109775495
FAM222B_chr17_28750980_28847790	1/1	a0001	562	269	72	57	97	6	35	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	a0002	562	2	1	1	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	a0003	562	2	2	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	a0004	562	1	0	0	1	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	a0005	562	1	0	0	0	0	1	copy fasta	FAM222B	chr17	28750980	28847790
FAM222B_chr17_28750980_28847790	0/0	a0006	562	1	1	0	0	0	0	copy fasta	FAM222B	chr17	28750980	28847790
FAM227A_chr22_38573118_38661392	1/1	a0001	570	284	73	52	118	14	25	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	a0002	570	43	9	0	33	0	1	copy fasta	FAM227A	chr22	38573118	38661392
FAM227A_chr22_38573118_38661392	0/0	a0003	570	1	0	0	1	0	0	copy fasta	FAM227A	chr22	38573118	38661392
FAM227B_chr15_49321970_49625818	1/1	a0001	508	283	62	46	114	14	45	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0002	508	3	2	1	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0003	508	2	0	0	0	0	2	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0004	508	2	0	1	0	0	1	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0005	508	2	2	0	0	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0006	508	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM227B_chr15_49321970_49625818	0/0	a0007	508	1	0	0	1	0	0	copy fasta	FAM227B	chr15	49321970	49625818
FAM228A_chr2_24170053_24196698	1/0	a0001	206	272	79	53	102	13	24	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/1	a0002	206	67	15	9	29	3	10	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	a0003	206	3	0	0	3	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	a0004	206	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	a0005	206	1	1	0	0	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	a0006	206	1	0	0	1	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228A_chr2_24170053_24196698	0/0	a0007	206	1	0	0	1	0	0	copy fasta	FAM228A	chr2	24170053	24196698
FAM228B_chr2_24118469_24174638	1/0	a0001	324	242	68	49	93	7	24	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/1	a0002	324	27	8	5	6	2	5	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	a0003	319	20	2	3	11	3	1	copy fasta	FAM228B	chr2	24118469	24174638
FAM228B_chr2_24118469_24174638	0/0	a0004	324	1	0	1	0	0	0	copy fasta	FAM228B	chr2	24118469	24174638
FAM229A_chr1_32356270_32367485	1/1	a0001	127	276	79	49	102	12	32	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	a0002	127	17	16	1	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	a0003	127	2	0	2	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229A_chr1_32356270_32367485	0/0	a0004	127	1	1	0	0	0	0	copy fasta	FAM229A	chr1	32356270	32367485
FAM229B_chr6_112082591_112107790	1/1	a0001	80	405	86	69	193	13	42	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	a0002	80	5	5	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	a0003	80	3	0	0	3	0	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM229B_chr6_112082591_112107790	0/0	a0004	80	3	3	0	0	0	0	copy fasta	FAM229B	chr6	112082591	112107790