JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM229B_chr6_112082591_112107790	0/0	a0005	80	2	0	1	0	1	0	copy fasta	FAM229B	chr6	112082591	112107790
FAM234A_chr16_229821_271096	1/1	a0001	552	368	87	70	152	14	43	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0002	552	14	0	1	13	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0003	552	8	0	3	5	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0004	552	3	3	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0005	552	2	0	2	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0006	552	2	0	0	2	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0007	552	2	2	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0008	552	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0009	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0010	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0011	552	1	1	0	0	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0012	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0013	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0014	552	1	0	0	0	0	1	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0015	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234A_chr16_229821_271096	0/0	a0016	552	1	0	0	1	0	0	copy fasta	FAM234A	chr16	229821	271096
FAM234B_chr12_13039381_13088449	1/1	a0001	622	388	70	68	191	15	42	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0002	622	21	21	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0003	622	11	0	0	9	1	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0004	622	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0005	622	1	0	0	0	0	1	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0006	622	1	0	0	1	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM234B_chr12_13039381_13088449	0/0	a0007	622	1	1	0	0	0	0	copy fasta	FAM234B	chr12	13039381	13088449
FAM236A_chrX_72933206_72943958	0/0	a0001	79	114	28	30	34	7	15	copy fasta	FAM236A	chrX	72933206	72943958
FAM236A_chrX_72933206_72943958	0/0	a0002	79	44	1	4	37	1	1	copy fasta	FAM236A	chrX	72933206	72943958
FAM236B_chrX_72776865_72787660	0/0	a0001	79	102	23	23	39	5	12	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	a0002	79	6	0	0	6	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	a0003	1	1	1	0	0	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236B_chrX_72776865_72787660	0/0	a0004	10	1	0	0	1	0	0	copy fasta	FAM236B	chrX	72776865	72787660
FAM236C_chrX_72907615_72918401	0/0	a0000	0	1	0	1	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	a0001	79	151	25	14	104	2	6	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	a0002	79	45	4	17	9	5	10	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	a0003	79	1	1	0	0	0	0	copy fasta	FAM236C	chrX	72907615	72918401
FAM236C_chrX_72907615_72918401	0/0	a0004	10	1	0	0	0	0	1	copy fasta	FAM236C	chrX	72907615	72918401
FAM236D_chrX_72802425_72813210	0/0	a0001	79	184	35	34	95	3	17	copy fasta	FAM236D	chrX	72802425	72813210
FAM236D_chrX_72802425_72813210	0/0	a0002	79	2	2	0	0	0	0	copy fasta	FAM236D	chrX	72802425	72813210
FAM237A_chr2_206637487_206654365	1/1	a0001	181	462	98	84	217	17	44	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	a0002	181	1	0	0	1	0	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237A_chr2_206637487_206654365	0/0	a0003	181	1	0	0	0	1	0	copy fasta	FAM237A	chr2	206637487	206654365
FAM237B_chr7_90311807_90326304	1/0	a0001	139	345	88	57	142	14	43	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/1	a0002	139	59	1	18	36	0	3	copy fasta	FAM237B	chr7	90311807	90326304
FAM237B_chr7_90311807_90326304	0/0	a0003	15	4	3	1	0	0	0	copy fasta	FAM237B	chr7	90311807	90326304
FAM240A_chr3_46607525_46631543	0/1	a0001	83	392	69	74	192	14	42	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	1/0	a0002	83	23	21	1	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	a0003	83	17	7	0	10	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	a0004	83	2	1	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	a0005	83	2	0	2	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	a0006	39	1	0	1	0	0	0	copy fasta	FAM240A	chr3	46607525	46631543
FAM240A_chr3_46607525_46631543	0/0	a0007	83	1	0	0	1	0	0	copy fasta	FAM240A	chr3	46607525	46631543