JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM240B_chr9_38689266_38725133	1/1	a0001	78	463	92	80	223	18	48	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	a0002	33	1	1	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	a0003	78	1	1	0	0	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240B_chr9_38689266_38725133	0/0	a0004	78	1	0	0	1	0	0	copy fasta	FAM240B	chr9	38689266	38725133
FAM240C_chr2_241888988_241905464	0/0	a0001	95	19	6	6	1	4	2	copy fasta	FAM240C	chr2	241888988	241905464
FAM240C_chr2_241888988_241905464	0/1	a0002	95	18	6	4	3	2	2	copy fasta	FAM240C	chr2	241888988	241905464
FAM241A_chr4_112140454_112200256	0/1	a0001	132	385	95	60	177	14	38	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	a0002	132	1	1	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	0/0	a0003	76	1	0	0	1	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241A_chr4_112140454_112200256	1/0	a0004	132	1	0	0	0	0	0	copy fasta	FAM241A	chr4	112140454	112200256
FAM241B_chr10_69625247_69638596	1/1	a0001	121	458	96	82	210	18	50	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	a0002	121	3	0	0	3	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM241B_chr10_69625247_69638596	0/0	a0003	121	1	0	0	1	0	0	copy fasta	FAM241B	chr10	69625247	69638596
FAM246A_chr22_21355601_21366299	1/1	a0001	232	251	67	62	73	11	36	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0002	233	122	6	17	88	2	9	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0003	233	8	8	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0004	233	7	4	0	3	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0005	232	6	0	0	6	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0006	232	6	6	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0007	232	4	4	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0008	232	3	0	2	0	1	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0009	189	2	0	0	2	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0010	232	1	0	1	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0011	232	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0012	237	1	0	0	0	0	1	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0013	233	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0014	232	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0015	232	1	1	0	0	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246A_chr22_21355601_21366299	0/0	a0016	233	1	0	0	1	0	0	copy fasta	FAM246A	chr22	21355601	21366299
FAM246B_chr22_18628984_18639682	1/0	a0001	232	29	9	5	12	0	2	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	a0002	232	3	3	0	0	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM246B_chr22_18628984_18639682	0/0	a0003	232	1	0	1	0	0	0	copy fasta	FAM246B	chr22	18628984	18639682
FAM24A_chr10_122905610_122918111	1/1	a0001	105	422	87	73	196	16	48	copy fasta	FAM24A	chr10	122905610	122918111
FAM24A_chr10_122905610_122918111	0/0	a0002	105	4	1	3	0	0	0	copy fasta	FAM24A	chr10	122905610	122918111
FAM24B_chr10_122844078_122884581	0/0	a0001	94	196	40	38	85	8	25	copy fasta	FAM24B	chr10	122844078	122884581
FAM24B_chr10_122844078_122884581	1/1	a0002	94	168	44	36	63	4	19	copy fasta	FAM24B	chr10	122844078	122884581
FAM25A_chr10_87015294_87029730	1/1	a0001	89	418	93	77	182	15	49	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	a0002	10	17	0	2	15	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	a0003	89	8	3	3	0	1	1	copy fasta	FAM25A	chr10	87015294	87029730
FAM25A_chr10_87015294_87029730	0/0	a0004	89	1	0	0	1	0	0	copy fasta	FAM25A	chr10	87015294	87029730
FAM25C_chr10_47990322_48004791	0/0	a0001	89	431	85	72	214	18	42	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	a0002	89	2	2	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	a0003	89	2	2	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25C_chr10_47990322_48004791	0/0	a0004	89	1	1	0	0	0	0	copy fasta	FAM25C	chr10	47990322	48004791
FAM25G_chr10_47482219_47496700	0/0	a0001	89	420	82	70	208	18	42	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	a0002	21	3	3	0	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM25G_chr10_47482219_47496700	0/0	a0003	89	1	1	0	0	0	0	copy fasta	FAM25G	chr10	47482219	47496700
FAM32A_chr19_16180410_16197046	1/1	a0001	112	411	96	72	182	18	41	copy fasta	FAM32A	chr19	16180410	16197046
FAM32A_chr19_16180410_16197046	0/0	a0002	112	1	0	0	0	0	1	copy fasta	FAM32A	chr19	16180410	16197046
FAM3A_chrX_154501171_154521232	1/1	a0001	230	337	79	62	147	13	34	copy fasta	FAM3A	chrX	154501171	154521232