JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM3A_chrX_154501171_154521232	0/0	a0002	230	1	0	0	1	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3A_chrX_154501171_154521232	0/0	a0003	230	1	1	0	0	0	0	copy fasta	FAM3A	chrX	154501171	154521232
FAM3B_chr21_41311801_41362727	1/1	a0001	235	266	64	60	92	13	35	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	a0002	235	27	21	4	1	0	1	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	a0003	235	18	5	1	11	1	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	a0004	235	2	0	0	2	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3B_chr21_41311801_41362727	0/0	a0005	136	1	0	1	0	0	0	copy fasta	FAM3B	chr21	41311801	41362727
FAM3C_chr7_121343878_121401308	1/1	a0001	227	270	82	64	82	14	26	copy fasta	FAM3C	chr7	121343878	121401308
FAM3D_chr3_58628946_58671774	1/1	a0001	224	364	84	62	161	9	46	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0002	224	28	8	11	1	4	4	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0003	224	2	0	0	2	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0004	224	1	0	0	0	1	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0005	224	1	1	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0006	224	1	1	0	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM3D_chr3_58628946_58671774	0/0	a0007	224	1	0	1	0	0	0	copy fasta	FAM3D	chr3	58628946	58671774
FAM43A_chr3_194680883_194694037	1/1	a0001	423	430	85	86	197	10	50	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0002	423	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0003	428	4	4	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0004	423	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0005	423	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0006	423	1	1	0	0	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43A_chr3_194680883_194694037	0/0	a0007	423	1	0	0	1	0	0	copy fasta	FAM43A	chr3	194680883	194694037
FAM43B_chr1_20547573_20560020	1/1	a0001	329	460	96	82	212	18	50	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	a0002	329	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	a0003	329	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	a0004	329	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM43B_chr1_20547573_20560020	0/0	a0005	329	1	0	0	1	0	0	copy fasta	FAM43B	chr1	20547573	20560020
FAM47A_chrX_34124752_34137314	1/1	a0001	791	193	45	27	91	6	22	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0002	791	78	14	12	44	5	3	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0003	778	27	6	16	1	2	2	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0004	791	5	0	0	5	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0005	791	5	5	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0006	791	3	3	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0007	791	2	0	0	2	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0008	804	2	2	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0009	779	1	0	0	0	0	1	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0010	646	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0011	791	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0012	791	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0013	791	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0014	791	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0015	791	1	1	0	0	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0016	791	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47A_chrX_34124752_34137314	0/0	a0017	155	1	0	0	1	0	0	copy fasta	FAM47A	chrX	34124752	34137314
FAM47B_chrX_34937796_34949915	1/1	a0001	645	301	69	47	146	9	28	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0002	645	5	0	3	0	2	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0003	645	4	0	0	4	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0004	645	4	0	3	0	1	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0005	645	2	0	0	0	1	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0006	645	2	2	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915