Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AGBL1_chr15_86074871_86921156	0/0	a0006	1121	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0007	1121	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0008	1121	2	1	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0009	1121	2	0	1	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0010	1121	2	2	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0011	1121	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0012	1121	1	0	0	0	0	1	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0013	1121	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0014	1121	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0015	1121	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0016	1121	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0017	1121	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0018	1121	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0019	1121	1	1	0	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0020	1121	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0021	1121	1	0	0	1	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL1_chr15_86074871_86921156	0/0	a0022	1121	1	0	1	0	0	0	copy fasta	AGBL1	chr15	86074871	86921156
AGBL2_chr11_47654591_47720369	0/1	a0001	902	207	49	31	98	6	22	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	1/0	a0002	902	125	25	24	48	8	19	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0003	902	7	1	4	0	1	1	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0004	902	3	0	0	2	1	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0005	902	3	0	0	3	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0006	902	3	3	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0007	902	2	2	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0008	902	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0009	902	1	0	0	1	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0010	902	1	0	1	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0011	902	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0012	902	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	a0013	902	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL3_chr7_134981508_135140778	0/0	a0001	920	200	31	39	90	9	31	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/1	a0002	920	49	19	11	10	2	6	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	1/0	a0003	920	48	31	3	11	0	2	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0004	920	11	1	10	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0005	920	2	1	1	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0006	920	2	2	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0007	920	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0008	920	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0009	920	1	0	0	0	1	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0010	920	1	0	0	0	0	1	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0011	920	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0012	920	1	0	0	1	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0013	920	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	a0014	920	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL4_chr1_48527854_50028954	0/0	a0001	503	90	41	13	26	0	10	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	a0002	503	8	7	1	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	a0003	503	2	2	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	a0004	503	2	2	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	a0005	503	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	a0006	503	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954