JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM47B_chrX_34937796_34949915	0/0	a0007	645	2	0	0	2	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0008	645	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0009	645	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0010	645	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0011	645	1	0	1	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0012	645	1	0	0	0	0	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0013	451	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0014	645	1	0	0	0	0	1	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0015	645	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0016	348	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0017	276	1	0	0	1	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47B_chrX_34937796_34949915	0/0	a0018	645	1	1	0	0	0	0	copy fasta	FAM47B	chrX	34937796	34949915
FAM47C_chrX_37003366_37016664	1/1	a0001	1035	200	12	41	114	11	20	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0002	1047	35	12	9	12	0	2	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0003	1035	26	22	4	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0004	1035	26	11	4	1	2	8	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0005	1035	3	3	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0006	1035	3	3	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0007	1035	2	2	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0008	1035	2	0	0	2	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0009	1035	2	0	0	2	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0010	1035	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0011	823	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0012	1035	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0013	1035	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0014	1047	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0015	1035	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0016	945	1	0	0	1	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0017	1035	1	1	0	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47C_chrX_37003366_37016664	0/0	a0018	1035	1	0	1	0	0	0	copy fasta	FAM47C	chrX	37003366	37016664
FAM47E_chr4_76246721_76288783	1/0	a0001	393	151	22	22	89	3	14	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0002	393	131	19	28	66	4	14	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0003	393	53	31	3	14	4	1	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/1	a0004	393	42	13	11	8	1	8	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0005	393	8	7	0	0	0	1	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0006	393	2	0	0	2	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0007	393	2	0	0	2	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0008	393	1	0	1	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0009	393	1	0	0	1	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM47E_chr4_76246721_76288783	0/0	a0010	393	1	0	1	0	0	0	copy fasta	FAM47E	chr4	76246721	76288783
FAM50A_chrX_154439141_154455654	1/1	a0001	339	272	74	60	100	7	29	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	a0002	140	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	a0003	172	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50A_chrX_154439141_154455654	0/0	a0004	98	1	0	0	1	0	0	copy fasta	FAM50A	chrX	154439141	154455654
FAM50B_chr6_3844373_3856317	1/1	a0001	325	468	92	81	229	18	46	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	a0002	325	9	0	0	9	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	a0003	325	2	2	0	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM50B_chr6_3844373_3856317	0/0	a0004	93	1	0	1	0	0	0	copy fasta	FAM50B	chr6	3844373	3856317
FAM53A_chr4_1634887_1689313	1/1	a0001	398	286	56	68	109	10	41	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0002	398	48	31	8	9	0	0	copy fasta	FAM53A	chr4	1634887	1689313