JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM53A_chr4_1634887_1689313	0/0	a0003	398	3	3	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0004	398	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0005	398	2	2	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0006	398	2	0	0	2	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0007	398	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0008	398	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0009	398	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0010	398	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0011	398	1	0	0	1	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0012	398	1	0	0	0	0	1	copy fasta	FAM53A	chr4	1634887	1689313
FAM53A_chr4_1634887_1689313	0/0	a0013	398	1	1	0	0	0	0	copy fasta	FAM53A	chr4	1634887	1689313
FAM53B_chr10_124614292_124749378	1/1	a0001	422	326	75	48	153	14	34	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	a0002	422	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	a0003	422	1	0	0	1	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	a0004	422	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53B_chr10_124614292_124749378	0/0	a0005	422	1	1	0	0	0	0	copy fasta	FAM53B	chr10	124614292	124749378
FAM53C_chr5_138333266_138354729	1/1	a0001	392	428	89	81	195	16	45	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	a0002	36	1	0	1	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	a0003	392	1	0	0	0	0	1	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	a0004	392	1	1	0	0	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM53C_chr5_138333266_138354729	0/0	a0005	392	1	0	0	1	0	0	copy fasta	FAM53C	chr5	138333266	138354729
FAM72A_chr1_206181179_206207839	1/1	a0001	149	346	96	62	136	10	40	copy fasta	FAM72A	chr1	206181179	206207839
FAM72B_chr1_121162646_121189340	1/1	a0001	149	364	76	70	152	18	46	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	a0002	149	13	13	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	a0003	149	2	0	0	0	0	2	copy fasta	FAM72B	chr1	121162646	121189340
FAM72B_chr1_121162646_121189340	0/0	a0004	149	1	1	0	0	0	0	copy fasta	FAM72B	chr1	121162646	121189340
FAM72C_chr1_143950287_143976986	0/0	a0001	149	229	52	49	96	10	22	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	a0002	149	11	9	0	2	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	a0003	149	7	7	0	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72C_chr1_143950287_143976986	0/0	a0004	149	1	0	1	0	0	0	copy fasta	FAM72C	chr1	143950287	143976986
FAM72D_chr1_145090974_145117696	0/0	a0001	149	300	64	66	125	14	31	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	a0002	149	13	0	0	13	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	a0003	149	2	0	0	0	0	2	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	a0004	149	2	2	0	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	a0005	149	2	0	1	0	0	1	copy fasta	FAM72D	chr1	145090974	145117696
FAM72D_chr1_145090974_145117696	0/0	a0006	149	1	0	1	0	0	0	copy fasta	FAM72D	chr1	145090974	145117696
FAM76A_chr1_27720961_27768116	1/1	a0001	307	260	88	38	100	4	28	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	a0002	307	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	a0003	307	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	a0004	307	1	1	0	0	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76A_chr1_27720961_27768116	0/0	a0005	307	1	0	0	1	0	0	copy fasta	FAM76A	chr1	27720961	27768116
FAM76B_chr11_95763953_95794782	1/1	a0001	339	416	100	76	178	14	46	copy fasta	FAM76B	chr11	95763953	95794782
FAM78A_chr9_131253078_131281510	1/1	a0001	283	414	96	77	173	16	50	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	a0002	283	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	a0003	283	1	0	1	0	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	a0004	283	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78A_chr9_131253078_131281510	0/0	a0005	283	1	0	0	1	0	0	copy fasta	FAM78A	chr9	131253078	131281510
FAM78B_chr1_166064299_166172001	1/1	a0001	261	318	82	68	130	8	28	copy fasta	FAM78B	chr1	166064299	166172001
FAM81A_chr15_59433186_59528555	1/1	a0001	368	370	90	65	162	12	39	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	a0002	368	2	0	1	0	1	0	copy fasta	FAM81A	chr15	59433186	59528555