JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM81A_chr15_59433186_59528555	0/0	a0003	368	1	0	0	0	0	1	copy fasta	FAM81A	chr15	59433186	59528555
FAM81A_chr15_59433186_59528555	0/0	a0004	368	1	0	0	0	1	0	copy fasta	FAM81A	chr15	59433186	59528555
FAM81B_chr5_95386366_95455441	1/1	a0001	452	330	88	66	123	11	40	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0002	452	6	0	3	0	1	2	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0003	143	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0004	452	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0005	452	2	0	0	2	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0006	452	2	0	2	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0007	452	1	1	0	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0008	452	1	0	1	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0009	452	1	0	0	1	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM81B_chr5_95386366_95455441	0/0	a0010	452	1	1	0	0	0	0	copy fasta	FAM81B	chr5	95386366	95455441
FAM83A_chr8_123177665_123215078	1/1	a0001	434	290	84	52	107	7	38	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0002	434	73	2	17	41	7	6	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0003	434	2	2	0	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0004	434	1	0	1	0	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0005	434	1	0	0	0	0	1	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0006	434	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0007	434	1	0	0	0	0	1	copy fasta	FAM83A	chr8	123177665	123215078
FAM83A_chr8_123177665_123215078	0/0	a0008	434	1	0	0	1	0	0	copy fasta	FAM83A	chr8	123177665	123215078
FAM83B_chr6_54841771_54950099	1/1	a0001	1011	174	19	43	78	3	29	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0002	1011	60	37	11	5	3	4	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0003	1011	22	22	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0004	1011	10	8	1	0	0	1	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0005	1011	2	2	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0006	1011	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0007	1011	1	1	0	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0008	1011	1	0	1	0	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83B_chr6_54841771_54950099	0/0	a0009	1011	1	0	0	1	0	0	copy fasta	FAM83B	chr6	54841771	54950099
FAM83C_chr20_35280731_35297425	1/1	a0001	747	230	21	53	122	9	23	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0002	747	105	29	14	35	9	18	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0003	747	36	36	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0004	747	7	5	2	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0005	747	6	0	0	6	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0006	747	4	0	0	4	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0007	747	1	0	0	0	0	1	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0008	747	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0009	747	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0010	747	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0011	747	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0012	747	1	0	0	1	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0013	747	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0014	747	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0015	747	1	0	1	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83C_chr20_35280731_35297425	0/0	a0016	747	1	1	0	0	0	0	copy fasta	FAM83C	chr20	35280731	35297425
FAM83D_chr20_38921417_38958106	1/0	a0001	585	164	32	28	84	3	16	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/1	a0002	585	139	31	25	68	3	11	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0003	585	7	7	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0004	584	6	5	1	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0005	586	4	0	3	0	0	1	copy fasta	FAM83D	chr20	38921417	38958106