JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM83D_chr20_38921417_38958106	0/0	a0006	584	3	3	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0007	587	3	1	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0008	586	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0009	585	2	0	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0010	585	2	0	0	2	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0011	585	2	2	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0012	586	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0013	585	1	0	1	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0014	559	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0015	585	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0016	585	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0017	585	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0018	585	1	0	0	1	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83D_chr20_38921417_38958106	0/0	a0019	585	1	1	0	0	0	0	copy fasta	FAM83D	chr20	38921417	38958106
FAM83E_chr19_48594961_48620076	0/0	a0001	478	164	51	28	71	3	11	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	1/0	a0002	478	128	26	36	30	12	23	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/1	a0003	478	86	12	12	52	1	8	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0004	478	13	0	0	13	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0005	478	9	9	0	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0006	478	5	0	0	1	0	4	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0007	478	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0008	478	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0009	478	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0010	275	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0011	478	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0012	478	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0013	478	1	0	1	0	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0014	478	1	0	0	1	0	0	copy fasta	FAM83E	chr19	48594961	48620076
FAM83E_chr19_48594961_48620076	0/0	a0015	478	1	0	0	0	0	1	copy fasta	FAM83E	chr19	48594961	48620076
FAM83F_chr22_39989954_40048534	1/1	a0001	500	146	44	34	38	5	23	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0002	500	67	27	11	10	2	17	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0003	500	7	7	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0004	500	6	0	2	0	1	3	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0005	500	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0006	500	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0007	500	1	0	0	0	0	1	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0008	500	1	0	1	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0009	500	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0010	500	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0011	500	1	0	0	1	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83F_chr22_39989954_40048534	0/0	a0012	500	1	1	0	0	0	0	copy fasta	FAM83F	chr22	39989954	40048534
FAM83G_chr17_18963789_19009764	0/1	a0001	824	166	31	35	66	9	24	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	1/0	a0002	823	93	28	19	33	4	8	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0003	824	71	20	8	33	1	9	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0004	823	35	6	2	23	0	4	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0005	823	4	0	0	4	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0006	823	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0007	824	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0008	824	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0009	823	1	0	1	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764