JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM83G_chr17_18963789_19009764	0/0	a0010	824	1	1	0	0	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0011	824	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0012	824	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0013	824	1	0	0	0	0	1	copy fasta	FAM83G	chr17	18963789	19009764
FAM83G_chr17_18963789_19009764	0/0	a0014	824	1	0	0	1	0	0	copy fasta	FAM83G	chr17	18963789	19009764
FAM83H_chr8_143718933_143738779	0/0	a0001	1179	247	71	50	91	10	25	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0002	1179	71	1	9	43	2	16	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/1	a0003	1179	16	1	2	12	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0004	1179	15	0	1	12	1	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0005	1179	10	7	1	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0006	1179	5	5	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0007	1179	4	0	3	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0008	1179	2	0	1	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0009	1179	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0010	1179	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0011	1179	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0012	1179	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0013	1179	2	2	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0014	1179	2	0	0	0	0	2	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0015	1179	1	0	0	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0016	1179	1	0	1	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0017	1179	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0018	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0019	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0020	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0021	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0022	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0023	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0024	1179	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0025	1179	1	1	0	0	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0026	1179	1	0	0	0	0	1	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0027	1179	1	0	0	0	1	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0028	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM83H_chr8_143718933_143738779	0/0	a0029	1179	1	0	0	1	0	0	copy fasta	FAM83H	chr8	143718933	143738779
FAM86B1_chr8_12177106_12199082	1/1	a0001	296	66	5	11	41	2	5	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0002	296	53	0	11	36	2	4	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0003	296	20	0	7	11	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0004	296	6	0	3	3	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0005	30	6	5	0	0	0	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0006	296	4	0	2	0	1	1	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0007	296	3	3	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0008	296	3	3	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0009	296	2	0	0	0	2	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0010	296	2	2	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0011	71	2	2	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0012	296	2	0	2	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0013	296	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0014	190	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0015	190	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0016	296	1	1	0	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082