JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM86B1_chr8_12177106_12199082	0/0	a0017	296	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0018	296	1	0	0	1	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B1_chr8_12177106_12199082	0/0	a0019	296	1	0	1	0	0	0	copy fasta	FAM86B1	chr8	12177106	12199082
FAM86B2_chr8_12419421_12441400	0/0	a0001	330	12	1	0	10	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0002	330	8	5	1	1	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0003	330	5	5	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0004	330	5	0	3	0	1	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0005	330	3	3	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0006	71	3	1	0	1	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0007	330	2	0	1	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0008	224	2	2	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0009	330	2	0	2	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0010	330	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0011	224	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0012	330	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0013	330	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0014	330	1	0	0	0	1	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0015	330	1	1	0	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0016	330	1	0	0	0	0	1	copy fasta	FAM86B2	chr8	12419421	12441400
FAM86B2_chr8_12419421_12441400	0/0	a0017	330	1	0	1	0	0	0	copy fasta	FAM86B2	chr8	12419421	12441400
FAM89A_chr1_231013958_231045254	1/1	a0001	184	449	93	76	214	18	46	copy fasta	FAM89A	chr1	231013958	231045254
FAM89A_chr1_231013958_231045254	0/0	a0002	184	1	1	0	0	0	0	copy fasta	FAM89A	chr1	231013958	231045254
FAM89B_chr11_65567538_65579190	0/0	a0001	189	364	96	66	146	16	40	copy fasta	FAM89B	chr11	65567538	65579190
FAM89B_chr11_65567538_65579190	0/0	a0002	189	2	0	0	2	0	0	copy fasta	FAM89B	chr11	65567538	65579190
FAM8A1_chr6_17595302_17616715	1/1	a0001	413	365	83	56	167	17	40	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	a0002	409	4	0	0	4	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	a0003	407	3	3	0	0	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	a0004	413	1	0	0	1	0	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM8A1_chr6_17595302_17616715	0/0	a0005	413	1	0	0	0	1	0	copy fasta	FAM8A1	chr6	17595302	17616715
FAM90A10_chr8_7763977_7776988	1/0	a0001	464	21	1	7	7	2	3	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0002	464	18	0	3	10	2	3	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0003	464	17	0	3	11	1	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0004	464	11	1	5	4	1	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0005	464	7	0	2	1	2	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0006	464	6	0	3	0	1	2	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0007	464	2	0	0	2	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0008	464	2	0	1	1	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0009	464	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0010	464	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0011	464	2	0	1	1	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0012	464	2	0	2	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0013	464	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0014	464	2	2	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0015	464	2	0	0	2	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0016	464	1	1	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0017	464	1	0	0	0	1	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0018	464	1	1	0	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0019	464	1	0	1	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0020	464	1	0	0	0	0	1	copy fasta	FAM90A10	chr8	7763977	7776988
FAM90A10_chr8_7763977_7776988	0/0	a0021	464	1	0	1	0	0	0	copy fasta	FAM90A10	chr8	7763977	7776988