JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FAM90A17_chr8_7741034_7754044	0/0	a0033	464	1	0	0	1	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0034	464	1	0	1	0	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0035	464	1	1	0	0	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0036	464	1	0	1	0	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0037	464	1	0	1	0	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0038	464	1	0	0	0	0	1	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0039	464	1	0	0	0	0	1	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0040	464	1	0	0	1	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0041	464	1	0	0	1	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0042	464	1	0	0	1	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A17_chr8_7741034_7754044	0/0	a0043	464	1	1	0	0	0	0	copy fasta	FAM90A17	chr8	7741034	7754044
FAM90A18_chr8_7718091_7731101	0/0	a0001	464	4	2	0	0	1	1	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0002	464	4	4	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0003	464	3	1	1	0	0	1	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0004	464	2	0	0	0	1	1	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0005	464	2	0	1	1	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0006	464	2	2	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0007	464	2	2	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0008	464	2	2	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0009	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0010	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0011	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0012	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0013	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0014	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0015	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0016	464	1	0	0	1	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0017	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0018	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0019	465	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0020	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0021	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0022	464	1	0	0	1	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0023	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0024	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0025	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0026	464	1	0	0	0	0	1	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0027	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0028	464	1	0	0	1	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0029	464	1	0	1	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0030	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A18_chr8_7718091_7731101	0/0	a0031	464	1	1	0	0	0	0	copy fasta	FAM90A18	chr8	7718091	7731101
FAM90A19_chr8_7748682_7761692	0/0	a0001	464	28	2	5	19	1	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0002	464	17	2	3	8	1	3	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0003	464	7	3	0	4	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0004	464	6	1	3	1	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0005	464	5	0	0	5	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0006	464	3	2	0	0	0	1	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0007	464	3	0	0	3	0	0	copy fasta	FAM90A19	chr8	7748682	7761692
FAM90A19_chr8_7748682_7761692	0/0	a0008	464	3	3	0	0	0	0	copy fasta	FAM90A19	chr8	7748682	7761692