Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
A1BG_chr19_58340183_58358492	0/1	c0001	1488	304	59	58	134	13	39	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	1/0	c0002	1488	63	26	12	19	3	2	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0003	1488	8	5	2	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0004	1488	2	0	2	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0005	1488	2	0	2	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0006	1488	1	0	0	0	0	1	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0008	1488	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0010	1488	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0011	1488	1	1	0	0	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	0/0	c0012	1488	1	0	0	1	0	0	copy fasta	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	1/1	c0001	1761	259	56	45	110	11	35	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0002	1761	35	10	1	19	0	5	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0003	1761	20	1	3	15	1	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0004	1761	9	8	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0005	1761	3	3	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0006	1761	3	3	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0007	1761	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0008	1761	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0009	1761	2	2	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0010	1761	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0011	1761	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	c0012	1761	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A2ML1_chr12_8817621_8881787	0/0	c0001	4365	73	7	9	50	2	5	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0002	4365	58	0	15	34	4	5	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/1	c0003	4365	38	9	8	14	1	5	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0004	4365	22	7	1	11	1	2	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0005	4365	13	0	9	0	2	2	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0006	4365	13	0	1	11	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0007	4365	12	1	0	8	0	3	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0008	4365	12	0	1	10	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0009	4363	10	0	2	1	2	5	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0010	4365	9	1	5	0	0	3	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	1/0	c0011	4365	7	5	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0012	4363	4	4	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0013	4365	4	0	0	3	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0014	4365	4	4	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0015	4365	4	3	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0016	4365	4	0	3	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0017	4365	4	0	0	3	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0018	4365	3	2	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0019	4365	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0020	4365	3	1	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0021	4363	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0022	4365	3	3	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0023	4365	3	0	1	0	0	2	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0024	4363	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0025	4365	2	0	2	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	c0026	4365	2	2	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787