Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AATK_chr17_81112295_81171221	0/0	c0005	4125	16	2	3	4	2	5	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0006	4125	14	12	1	0	1	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0007	4125	14	4	1	6	0	3	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0008	4125	9	3	2	3	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0009	4125	9	1	1	4	0	3	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0010	4125	7	6	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0011	4125	5	1	0	3	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0012	4131	4	2	0	1	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0013	4131	4	4	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0014	4125	3	2	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0015	4125	3	3	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0016	4131	3	0	1	2	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0017	4131	3	0	0	1	1	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0018	4125	3	0	2	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0019	4125	3	3	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0020	4125	2	0	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0021	4125	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0022	4125	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0023	4125	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0024	4125	2	0	0	2	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0025	4125	2	0	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0026	4125	2	0	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0027	4125	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0028	4125	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0029	4125	2	0	0	0	0	2	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0030	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0031	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0032	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0033	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0034	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0035	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0036	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0037	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0038	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0039	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0040	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0041	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0042	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0043	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0044	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0045	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0046	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0047	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0048	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0049	4125	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0050	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0051	4125	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0052	4125	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0053	4125	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	c0054	4131	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221