Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM19_chr5_157472304_157580775	0/0	c0005	2757	9	9	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0006	2757	6	6	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0007	2757	5	2	1	0	2	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0008	2757	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0009	2757	4	4	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0010	2757	3	1	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0011	2757	2	2	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0012	2757	2	0	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0013	2757	2	0	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0014	2757	2	0	2	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0015	2757	2	1	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0016	2757	2	2	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0017	2757	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0018	2757	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0019	2757	1	0	1	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0020	2757	1	0	0	0	1	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM19_chr5_157472304_157580775	0/0	c0021	2757	1	1	0	0	0	0	copy fasta	ADAM19	chr5	157472304	157580775
ADAM20_chr14_70517358_70540004	1/1	c0001	2181	352	66	65	170	11	38	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0002	2181	26	9	4	12	1	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0003	2181	8	8	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0004	2181	6	0	0	6	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0005	2181	3	0	3	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0006	2181	1	1	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0007	2181	1	0	0	1	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0008	2219	1	0	0	1	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0009	2181	1	1	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM20_chr14_70517358_70540004	0/0	c0010	2181	1	1	0	0	0	0	copy fasta	ADAM20	chr14	70517358	70540004
ADAM21_chr14_70447174_70464905	0/0	c0001	2169	104	14	14	67	1	8	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0002	2169	89	15	22	33	2	17	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/1	c0003	2169	73	1	24	23	11	13	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0004	2169	36	9	4	20	1	2	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0005	2169	28	4	1	23	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0006	2169	26	0	0	26	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0007	2169	7	7	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0008	2169	6	5	1	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0009	2169	6	0	0	6	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0010	2169	5	5	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0011	2169	5	1	2	0	1	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0012	2169	4	4	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0013	2169	4	0	0	4	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0014	2169	3	3	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0015	2169	3	3	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0016	2169	2	0	0	2	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0017	2169	2	1	1	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0018	2169	2	2	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0019	2169	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0020	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0021	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0022	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0023	2169	1	0	1	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905