JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CITED4_chr1_40856054_40867363	0/0	c0010	555	1	0	0	1	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0011	555	1	0	0	0	0	1	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0012	555	1	1	0	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0013	555	1	0	0	0	1	0	copy fasta	CITED4	chr1	40856054	40867363
CIT_chr12_119680791_119882320	0/1	c0001	6210	92	15	16	46	2	12	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	1/0	c0002	6210	38	4	3	24	3	3	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0003	6210	25	14	7	0	1	3	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0004	6210	13	11	2	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0005	6210	10	10	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0006	6210	9	1	0	8	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0007	6210	6	5	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0008	6210	3	3	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0009	6210	3	3	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0010	6210	2	0	0	2	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0011	6210	2	0	1	0	0	1	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0012	6210	2	0	0	0	0	2	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0013	6210	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0014	6210	2	0	0	2	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0015	6210	2	1	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0016	6210	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0017	6210	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0018	6210	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0019	6210	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0020	6210	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0021	6210	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0022	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0023	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0024	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0025	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0026	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0027	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0028	6210	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0029	6210	1	0	0	0	0	1	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0030	6210	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0031	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0032	6210	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0033	6210	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0034	6210	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0035	6210	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	c0036	6210	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIZ1_chr9_128161065_128196572	1/1	c0001	2697	273	42	50	136	10	33	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0002	2697	29	25	2	0	0	2	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0003	2697	20	0	0	19	0	1	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0004	2697	8	0	0	8	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0005	2697	8	7	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0006	2697	7	0	0	7	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0007	2697	6	6	0	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0008	2697	5	0	1	0	2	2	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0009	2697	4	2	0	0	2	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0010	2697	4	0	3	0	0	1	copy fasta	CIZ1	chr9	128161065	128196572