JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIZ1_chr9_128161065_128196572	0/0	c0011	2697	3	3	0	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0012	2697	2	2	0	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0013	2697	2	0	0	2	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0014	2697	1	1	0	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0015	2697	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0016	2697	1	0	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0017	2697	1	0	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0018	2697	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0019	2697	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0020	2697	1	0	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0021	2697	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	c0022	2697	1	0	0	0	0	1	copy fasta	CIZ1	chr9	128161065	128196572
CKAP2L_chr2_112731349_112769609	0/0	c0001	2238	144	43	33	50	7	11	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0002	2238	89	6	20	52	2	9	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0003	2238	14	14	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0004	2238	8	8	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0005	2238	6	2	4	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0006	2238	5	5	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0007	2238	4	4	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/1	c0008	2238	4	1	2	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0009	2238	3	0	0	3	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0010	2238	3	3	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0011	2238	3	3	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0012	2238	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0013	2238	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0014	2238	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0015	2238	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0016	2238	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0017	2238	1	0	0	1	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	1/0	c0018	2238	1	0	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0019	2238	1	0	0	0	0	1	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0020	2238	1	0	0	0	0	1	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0021	2238	1	0	0	0	1	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0022	2238	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0023	2238	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	c0024	2238	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2_chr13_52450478_52481627	0/1	c0001	2049	368	86	65	161	13	42	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0002	2049	7	0	1	4	0	2	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0003	2049	7	0	0	7	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0004	2049	5	0	5	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0005	2049	4	3	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0006	2049	3	0	2	0	1	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	1/0	c0007	2049	2	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0008	2049	2	1	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0009	2049	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0010	2049	1	0	0	1	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0011	2049	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0012	2049	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0013	2049	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0014	2049	1	0	0	1	0	0	copy fasta	CKAP2	chr13	52450478	52481627