JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLASP1_chr2_121332776_121654462	0/0	c0009	4680	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0010	4680	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0011	4680	1	0	0	0	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP2_chr3_33491245_33723254	1/1	c0001	4521	236	70	37	94	12	21	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0002	4521	12	1	6	4	1	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0003	4521	4	0	2	0	0	2	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0004	4521	4	4	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0005	4521	4	0	3	0	0	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0006	4521	3	3	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0007	4521	3	0	3	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0008	4521	2	1	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0009	4521	2	0	0	2	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0010	4521	1	0	0	0	0	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0011	4521	1	0	0	0	0	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0012	4521	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0013	4521	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0014	4521	1	0	1	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0015	4521	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0016	4521	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	c0017	4521	1	0	0	0	1	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASRP_chr19_45034045_45075956	1/1	c0001	2025	336	92	66	129	10	37	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0002	2025	7	0	0	7	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0003	2026	6	2	0	4	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0004	2025	3	1	2	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0005	2025	2	0	2	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0006	2025	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0007	2025	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0008	2025	1	0	0	0	0	1	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0009	2025	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0010	2013	1	1	0	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0011	2025	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0012	2025	1	1	0	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0013	2025	1	1	0	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0014	2025	1	0	0	0	0	1	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	c0015	2025	1	0	0	0	0	1	copy fasta	CLASRP	chr19	45034045	45075956
CLBA1_chr14_104980788_105000516	0/1	c0001	978	290	62	62	123	12	30	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	1/0	c0002	978	122	17	13	76	1	14	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0003	978	10	0	0	10	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0004	978	8	7	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0005	978	4	4	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0006	978	3	1	0	0	0	2	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0007	978	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0008	978	1	0	0	1	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0009	978	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0010	978	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0011	978	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0012	978	1	1	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	c0013	978	1	0	0	0	1	0	copy fasta	CLBA1	chr14	104980788	105000516
CLCA1_chr1_86463927_86505259	0/0	c0001	2745	94	14	34	32	4	10	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0002	2745	78	10	11	48	3	6	copy fasta	CLCA1	chr1	86463927	86505259