JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCF1_chr11_67359168_67378598	0/0	c0008	678	1	0	0	0	1	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0009	678	1	0	0	0	1	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCN1_chr7_143311111_143357083	0/0	c0001	2967	171	19	36	90	9	17	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0002	2967	87	15	12	45	2	13	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0003	2967	32	6	5	17	1	3	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0004	2967	30	16	6	4	1	3	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0005	2967	29	14	9	3	1	2	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/1	c0006	2967	20	7	5	0	4	3	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0007	2967	8	0	0	8	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0008	2967	7	7	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0009	2967	3	3	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0010	2967	2	2	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0011	2967	2	0	2	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0012	2967	2	2	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0013	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	1/0	c0014	2967	1	0	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0015	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0016	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0017	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0018	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0019	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0020	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0021	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0022	2967	1	0	1	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0023	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0024	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0025	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0026	2967	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0027	2967	1	0	0	0	0	1	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0028	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0029	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0030	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0031	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0032	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	c0033	2967	1	1	0	0	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN2_chr3_184341185_184366605	1/0	c0001	2697	169	23	19	108	3	15	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0002	2697	99	7	16	67	3	6	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/1	c0003	2697	78	21	22	8	10	16	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0004	2697	56	39	5	5	1	6	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0005	2697	23	0	1	21	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0006	2700	4	0	4	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0007	2697	4	1	3	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0008	2697	3	0	0	3	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0009	2697	3	3	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0010	2697	2	0	2	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0011	2697	2	0	0	0	0	2	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0012	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0013	2697	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0014	2697	1	0	1	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0015	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605