JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCN2_chr3_184341185_184366605	0/0	c0016	2697	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0017	2697	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0018	2697	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0019	2697	1	0	1	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0020	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0021	2697	1	0	0	0	1	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0022	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0023	2697	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0024	2697	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0025	2697	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0026	2697	1	0	0	0	0	1	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0027	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	c0028	2697	1	1	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN3_chr4_169615578_169728673	1/1	c0001	2457	167	54	32	44	9	26	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0002	2457	66	10	12	35	4	5	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0003	2457	50	29	5	8	3	5	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0004	2457	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0005	2457	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0006	2457	1	0	0	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0007	2457	1	0	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	c0008	2457	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN4_chrX_10151975_10242660	1/1	c0001	2283	227	43	45	97	13	27	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0002	2283	30	24	5	0	0	1	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0003	2283	2	2	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0004	2285	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0005	2283	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0006	2284	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0007	2283	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	c0008	2283	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN5_chrX_49917596_50104230	0/1	c0001	2451	143	31	23	67	5	16	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0002	2451	16	15	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0003	2451	8	7	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	1/0	c0004	2451	3	2	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0005	2451	1	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0006	2451	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0007	2451	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0008	2451	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	c0009	2451	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN6_chr1_11801191_11848130	0/1	c0001	2610	235	78	43	68	9	36	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0002	2610	26	0	4	20	0	2	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0003	2610	8	8	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0004	2610	6	0	5	0	1	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0005	2610	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0006	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	1/0	c0007	2610	1	0	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0008	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0009	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0010	2610	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0011	2610	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0012	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130