JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCN6_chr1_11801191_11848130	0/0	c0013	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0014	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0015	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0016	2610	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0017	2610	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0018	2610	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	c0019	2610	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN7_chr16_1439935_1480028	0/1	c0001	2418	125	17	8	84	1	14	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0002	2418	78	24	11	31	5	7	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	1/0	c0003	2418	62	0	23	18	6	14	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0004	2418	55	9	13	24	2	7	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0005	2418	28	11	6	4	1	6	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0006	2418	13	3	9	0	1	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0007	2418	7	7	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0008	2418	5	4	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0009	2418	5	5	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0010	2418	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0011	2418	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0012	2418	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0013	2409	2	0	1	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0014	2618	2	0	1	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0015	2418	2	1	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0016	2409	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0017	2418	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0018	2418	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0019	2418	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0020	2418	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0021	2409	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0023	2409	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0024	2418	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0025	2418	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	c0026	2418	1	0	0	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCNKA_chr1_16017036_16039050	0/0	c0001	2064	139	31	18	73	2	15	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	1/1	c0002	2064	78	12	39	0	8	17	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0003	2064	58	3	7	46	1	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0004	2064	23	2	1	12	2	6	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0005	2064	23	18	5	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0006	2064	14	6	5	2	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0007	2064	11	2	0	9	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0008	2064	4	0	1	0	2	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0009	2064	4	4	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0010	2064	3	3	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0011	2064	3	0	0	3	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0012	2064	3	0	0	3	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0013	2064	3	3	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0014	2064	2	0	0	0	1	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0015	2064	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0016	2064	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0017	2064	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050