JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCNKA_chr1_16017036_16039050	0/0	c0018	2064	2	0	0	2	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0019	2064	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0020	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0021	2064	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0022	2064	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0023	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0024	2064	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0025	2064	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0026	2064	1	1	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0027	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0028	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0029	2064	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0030	11269	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0031	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0032	2064	1	0	0	0	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0033	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	c0034	2064	1	0	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKB_chr1_16038782_16062308	0/0	c0001	2064	149	8	20	104	3	14	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0002	2064	40	2	5	26	1	6	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0003	2064	36	7	6	20	0	3	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/1	c0004	2064	34	0	18	0	6	9	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0005	2064	22	11	7	2	0	2	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0006	2064	20	5	6	0	3	6	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0007	2064	13	10	3	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0008	2064	12	0	2	9	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0009	2064	11	8	3	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0010	2064	10	0	4	0	3	3	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0011	2064	7	2	0	5	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0012	2064	6	0	6	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0013	2064	4	4	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0014	2064	4	3	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0015	2064	3	2	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0016	2064	3	0	1	0	1	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0017	2064	3	3	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0018	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0019	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0020	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0021	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0022	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	1/0	c0023	2064	2	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0024	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0025	2064	2	1	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0026	2064	2	0	0	2	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0027	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0028	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0029	2064	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0030	2064	2	0	1	0	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0031	2064	2	0	0	2	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0032	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0033	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308