JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCNKB_chr1_16038782_16062308	0/0	c0034	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0035	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0036	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0037	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0038	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0039	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0040	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0041	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0042	2064	1	0	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0043	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0044	2064	1	0	0	0	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0045	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0046	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0047	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0048	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0049	2064	1	0	0	0	1	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0050	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0051	2064	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0052	2064	1	0	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0053	2064	1	0	0	0	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	c0054	2064	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLC_chr19_39726255_39743029	0/1	c0001	429	221	70	38	83	11	18	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	1/0	c0002	429	200	24	32	118	7	18	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	c0003	429	11	0	10	1	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	c0004	429	3	3	0	0	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	c0005	429	3	0	0	3	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	c0006	429	3	3	0	0	0	0	copy fasta	CLC	chr19	39726255	39743029
CLC_chr19_39726255_39743029	0/0	c0007	429	1	0	0	1	0	0	copy fasta	CLC	chr19	39726255	39743029
CLDN10_chr13_95547720_95584759	1/1	c0001	687	392	81	66	187	16	40	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	c0002	687	5	5	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	c0003	687	1	1	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	c0004	687	1	0	0	1	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	c0005	687	1	1	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN11_chr3_170413868_170439691	1/1	c0001	624	404	98	72	184	10	38	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	c0002	624	3	2	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	c0003	624	1	0	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN12_chr7_90398461_90420954	1/1	c0001	735	409	92	77	180	14	44	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	c0002	735	3	3	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	c0003	735	2	1	1	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN14_chr21_36455621_36485122	1/1	c0001	720	334	53	49	184	6	40	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0002	720	39	17	13	0	5	4	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0003	720	15	8	5	1	1	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0004	720	11	10	1	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0005	720	9	8	1	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0006	720	5	0	4	0	0	1	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0007	720	3	2	1	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0008	720	2	2	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0009	720	2	0	0	0	2	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0010	720	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0011	720	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122