JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLDN14_chr21_36455621_36485122	0/0	c0012	720	1	0	0	0	0	1	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	c0013	720	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN15_chr7_101227094_101242802	1/1	c0001	687	316	76	48	152	11	27	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	c0002	687	85	18	10	33	5	19	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	c0003	687	1	0	0	1	0	0	copy fasta	CLDN15	chr7	101227094	101242802
CLDN16_chr3_190383163_190417138	1/1	c0001	708	431	90	74	200	17	48	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	c0002	708	4	3	1	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	c0003	708	2	1	1	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	c0004	708	1	0	0	0	1	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN17_chr21_30160565_30171805	1/1	c0001	675	367	88	64	156	16	41	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0002	675	50	0	8	37	2	3	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0003	675	8	0	2	6	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0004	675	3	3	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0005	675	2	0	0	2	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0006	675	2	0	0	2	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0007	675	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0008	675	1	0	0	1	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0009	675	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	c0010	675	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN18_chr3_138005165_138038649	1/1	c0001	786	356	80	64	158	15	37	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0002	786	22	6	5	5	3	3	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0003	786	8	6	2	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0004	786	3	0	3	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0005	786	2	0	0	2	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0006	786	2	0	2	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	c0007	786	1	0	0	1	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN19_chr1_42728093_42745236	1/1	c0001	675	402	86	62	195	17	40	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0002	675	11	4	5	0	0	2	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0003	675	7	0	5	0	0	2	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0004	675	5	5	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0005	675	1	0	0	0	1	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0006	675	1	0	0	1	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	c0007	675	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN1_chr3_190300707_190327446	0/0	c0001	636	334	51	67	160	14	42	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	1/1	c0002	636	87	21	18	38	3	5	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0003	636	24	23	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0004	636	18	0	2	13	1	2	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0005	636	2	2	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0006	636	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0007	636	1	0	0	0	0	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	c0008	636	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN20_chr6_155259013_155281548	0/0	c0001	660	152	20	28	84	2	18	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0002	660	138	31	24	69	3	11	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	1/1	c0003	660	84	35	22	5	9	11	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0004	660	3	3	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0005	660	2	2	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0006	660	1	0	0	1	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0007	660	1	1	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0008	660	1	1	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	c0009	660	1	1	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548