JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLDN20_chr6_155259013_155281548	0/0	c0010	660	1	0	0	1	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN22_chr4_183313100_183325276	1/1	c0001	663	422	78	80	202	18	42	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0002	663	11	9	2	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0003	663	4	4	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0004	663	2	2	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0005	663	2	2	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0006	663	2	0	0	2	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0007	663	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0008	2871	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	c0009	663	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN23_chr8_8696937_8709096	1/1	c0001	879	260	68	54	96	12	28	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0002	879	83	7	2	62	1	11	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0003	879	46	1	15	24	1	5	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0004	879	17	13	2	0	2	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0005	879	7	0	0	7	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0006	879	7	0	3	4	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0007	879	3	0	0	3	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0008	879	2	0	2	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0009	879	2	0	0	2	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0010	879	2	0	0	0	0	2	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0011	879	2	2	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0012	879	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0013	879	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0014	879	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0015	879	1	0	0	1	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0016	879	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0017	879	1	0	0	1	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	c0018	879	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN24_chr4_183316764_183327426	0/0	c0001	663	178	28	46	77	7	20	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	1/0	c0002	663	152	33	22	80	4	12	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/1	c0003	663	88	17	11	45	5	9	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0004	663	10	9	0	0	0	1	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0005	663	6	6	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0006	663	5	0	3	0	2	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0007	663	4	2	2	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0008	663	1	1	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0009	663	1	1	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN24_chr4_183316764_183327426	0/0	c0010	663	1	1	0	0	0	0	copy fasta	CLDN24	chr4	183316764	183327426
CLDN25_chr11_113774796_113785485	1/1	c0001	690	425	89	78	206	10	40	copy fasta	CLDN25	chr11	113774796	113785485
CLDN25_chr11_113774796_113785485	0/0	c0002	690	7	7	0	0	0	0	copy fasta	CLDN25	chr11	113774796	113785485
CLDN25_chr11_113774796_113785485	0/0	c0003	690	2	0	0	0	0	2	copy fasta	CLDN25	chr11	113774796	113785485
CLDN2_chrX_106915402_106935861	1/1	c0001	693	251	68	49	98	9	25	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	c0002	693	2	2	0	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	c0003	693	1	0	0	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	c0004	693	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN34_chrX_9962358_9973352	1/0	c0001	645	150	33	32	67	6	11	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/1	c0002	645	145	19	23	77	7	18	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0003	645	14	10	2	2	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0004	645	10	7	3	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0005	645	7	7	0	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352