JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLDN34_chrX_9962358_9973352	0/0	c0006	647	1	0	0	1	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0007	646	1	0	0	1	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0008	645	1	0	0	0	0	1	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	c0009	645	1	0	0	1	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN3_chr7_73763997_73775270	1/1	c0001	663	402	87	84	171	16	42	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	c0002	663	6	6	0	0	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	c0003	663	1	1	0	0	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	c0004	663	1	0	0	1	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN4_chr7_73825996_73837690	1/1	c0001	630	366	89	71	151	14	39	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0002	630	1	1	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0003	630	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0004	630	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0005	613	1	0	1	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0006	630	1	0	0	0	0	1	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	c0007	630	1	0	0	1	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN5_chr22_19518027_19529410	1/1	c0001	657	429	84	78	209	14	42	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	c0002	657	11	11	0	0	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	c0003	657	1	1	0	0	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	c0004	657	1	0	0	1	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN6_chr16_3009712_3023183	1/1	c0001	663	153	21	40	64	4	22	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0002	663	127	36	23	49	9	10	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0003	663	101	14	15	62	2	8	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0004	663	14	12	2	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0005	663	8	1	2	0	1	4	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0006	663	8	8	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0007	663	4	4	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0008	663	3	0	1	1	1	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0009	663	2	0	0	0	1	1	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0010	663	1	0	1	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0011	663	1	0	0	0	0	1	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0012	663	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	c0013	663	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN7_chr17_7254903_7267478	0/0	c0001	636	239	73	40	86	11	29	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	1/1	c0002	636	118	14	33	56	4	9	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0003	636	54	2	3	49	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0004	636	2	0	0	0	2	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0005	636	2	0	1	0	1	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0006	636	1	0	0	1	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0007	636	1	1	0	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	c0008	636	1	0	1	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN8_chr21_30209006_30221097	1/1	c0001	678	263	25	59	126	16	35	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0002	678	151	35	17	91	2	6	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0003	678	29	18	7	1	0	3	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0004	678	7	7	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0005	678	7	6	1	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0006	678	5	5	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0007	678	2	0	0	2	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0008	678	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	c0009	678	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN9_chr16_3007923_3019505	1/1	c0001	654	399	89	74	175	16	43	copy fasta	CLDN9	chr16	3007923	3019505