JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC12A_chr12_9966409_9990595	0/0	c0001	798	278	56	39	156	5	22	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	1/0	c0002	798	90	33	20	22	7	7	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/1	c0003	798	69	7	9	35	6	11	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	c0004	798	1	1	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	c0005	798	1	0	0	1	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	c0006	798	1	1	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12B_chr12_10005627_10023796	0/1	c0001	831	297	42	40	178	9	27	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	c0002	831	115	30	24	42	6	13	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	1/0	c0003	831	24	3	6	7	3	4	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	c0004	831	17	14	1	1	0	1	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	c0005	831	9	4	5	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	c0006	831	3	3	0	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	c0007	831	1	0	0	0	0	1	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC14A_chr14_38249000_38261093	1/1	c0001	1473	388	75	72	181	14	44	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0002	1473	8	8	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0003	1473	4	0	0	4	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0004	1473	2	2	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0005	1473	1	0	0	0	0	1	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0006	1473	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0007	1473	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0008	1473	1	0	0	1	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0009	1473	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0010	1473	1	0	0	0	0	1	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0011	1473	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0013	1473	1	0	0	1	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	c0014	1473	1	0	0	1	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC16A_chr16_10939564_11187186	1/1	c0001	3162	109	22	24	45	5	11	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0002	3162	93	29	20	27	5	12	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0003	3162	39	7	7	17	3	5	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0004	3162	6	6	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0005	3162	4	4	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0006	3162	3	3	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0007	3162	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0008	3162	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0009	3162	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0010	3162	2	0	0	2	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0011	3162	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0012	3162	1	0	0	0	1	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0013	3162	1	0	1	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0014	3162	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0015	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0016	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0017	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0018	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0019	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0020	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	c0021	3162	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC17A_chr19_14578084_14617035	1/1	c0001	1137	323	69	67	139	18	28	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0002	1140	27	21	1	1	0	4	copy fasta	CLEC17A	chr19	14578084	14617035